miRNA display CGI


Results 21 - 40 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30204 5' -51.1 NC_006273.1 + 89580 0.66 0.998487
Target:  5'- -aGCGCCGaaaagacggcCACaaaGUCGCUUUUGccgugCGCg -3'
miRNA:   3'- cgCGCGGC----------GUG---CAGCGAAAAUaa---GCG- -5'
30204 5' -51.1 NC_006273.1 + 109781 0.66 0.998487
Target:  5'- gGUGUGUa-CAgGUCGCUgaggUAUUCGUg -3'
miRNA:   3'- -CGCGCGgcGUgCAGCGAaa--AUAAGCG- -5'
30204 5' -51.1 NC_006273.1 + 128351 0.66 0.99846
Target:  5'- aCGCGCCGCAaGUuuuccauaaucacCGUUUU--UUCGCc -3'
miRNA:   3'- cGCGCGGCGUgCA-------------GCGAAAauAAGCG- -5'
30204 5' -51.1 NC_006273.1 + 38501 0.66 0.998316
Target:  5'- cCGUGCCGCucgccgcuggcggcgACGUCGUccccg-UCGCc -3'
miRNA:   3'- cGCGCGGCG---------------UGCAGCGaaaauaAGCG- -5'
30204 5' -51.1 NC_006273.1 + 233394 0.66 0.998316
Target:  5'- cCGUGCCGCucgccgcuggcggcgACGUCGUccccg-UCGCc -3'
miRNA:   3'- cGCGCGGCG---------------UGCAGCGaaaauaAGCG- -5'
30204 5' -51.1 NC_006273.1 + 55012 0.66 0.998316
Target:  5'- cGCGCaaGCCGUGCGUCGUcacaucaaccggcuaUUUU-UUCGg -3'
miRNA:   3'- -CGCG--CGGCGUGCAGCG---------------AAAAuAAGCg -5'
30204 5' -51.1 NC_006273.1 + 233230 0.66 0.998193
Target:  5'- uGC-CGCCGC-CGUCGCguc----CGCc -3'
miRNA:   3'- -CGcGCGGCGuGCAGCGaaaauaaGCG- -5'
30204 5' -51.1 NC_006273.1 + 158348 0.66 0.998193
Target:  5'- aGCGCaagGCCGaGCGUCGU------UCGCg -3'
miRNA:   3'- -CGCG---CGGCgUGCAGCGaaaauaAGCG- -5'
30204 5' -51.1 NC_006273.1 + 38337 0.66 0.998193
Target:  5'- uGC-CGCCGC-CGUCGCguc----CGCc -3'
miRNA:   3'- -CGcGCGGCGuGCAGCGaaaauaaGCG- -5'
30204 5' -51.1 NC_006273.1 + 58032 0.66 0.998193
Target:  5'- gGC-CGCCauuucCACGUCGUUUUggaUCGCc -3'
miRNA:   3'- -CGcGCGGc----GUGCAGCGAAAauaAGCG- -5'
30204 5' -51.1 NC_006273.1 + 173547 0.66 0.998193
Target:  5'- cGCGCGCCGUcuguaccgugGCGUgGCUUa------- -3'
miRNA:   3'- -CGCGCGGCG----------UGCAgCGAAaauaagcg -5'
30204 5' -51.1 NC_006273.1 + 234915 0.66 0.998063
Target:  5'- gGUGUGCCGCGggugUGUCGCgggcgugUGCc -3'
miRNA:   3'- -CGCGCGGCGU----GCAGCGaaaauaaGCG- -5'
30204 5' -51.1 NC_006273.1 + 84 0.66 0.998063
Target:  5'- gGUGUGCCGCGggugUGUCGCgggcgugUGCc -3'
miRNA:   3'- -CGCGCGGCGU----GCAGCGaaaauaaGCG- -5'
30204 5' -51.1 NC_006273.1 + 194977 0.66 0.998063
Target:  5'- gGUGUGCCGCGggugUGUCGCgggcgugUGCc -3'
miRNA:   3'- -CGCGCGGCGU----GCAGCGaaaauaaGCG- -5'
30204 5' -51.1 NC_006273.1 + 197145 0.66 0.997852
Target:  5'- cCGUGCCGCGCGccaUGCUggUGguggUGCu -3'
miRNA:   3'- cGCGCGGCGUGCa--GCGAaaAUaa--GCG- -5'
30204 5' -51.1 NC_006273.1 + 109441 0.66 0.997852
Target:  5'- uGUGUGUgguaUGCAUGUUGCgcgucaGUUCGCa -3'
miRNA:   3'- -CGCGCG----GCGUGCAGCGaaaa--UAAGCG- -5'
30204 5' -51.1 NC_006273.1 + 79396 0.66 0.997852
Target:  5'- -aGCGuuGCACGUUaCUUUgag-CGCc -3'
miRNA:   3'- cgCGCggCGUGCAGcGAAAauaaGCG- -5'
30204 5' -51.1 NC_006273.1 + 212032 0.66 0.997852
Target:  5'- uGCGCaGCCGCugacacaGUCGCUgggggAUcCGUa -3'
miRNA:   3'- -CGCG-CGGCGug-----CAGCGAaaa--UAaGCG- -5'
30204 5' -51.1 NC_006273.1 + 2252 0.66 0.997852
Target:  5'- cCGUGCCGCGCGccaUGCUggUGguggUGCu -3'
miRNA:   3'- cGCGCGGCGUGCa--GCGAaaAUaa--GCG- -5'
30204 5' -51.1 NC_006273.1 + 85160 0.66 0.997702
Target:  5'- aGCGUGuuGCGCGUcaacCGCcagcgagCGCa -3'
miRNA:   3'- -CGCGCggCGUGCA----GCGaaaauaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.