miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30204 5' -51.1 NC_006273.1 + 84 0.66 0.998063
Target:  5'- gGUGUGCCGCGggugUGUCGCgggcgugUGCc -3'
miRNA:   3'- -CGCGCGGCGU----GCAGCGaaaauaaGCG- -5'
30204 5' -51.1 NC_006273.1 + 425 1.14 0.007651
Target:  5'- uGCGCGCCGCACGUCGCUUUUAUUCGCc -3'
miRNA:   3'- -CGCGCGGCGUGCAGCGAAAAUAAGCG- -5'
30204 5' -51.1 NC_006273.1 + 763 0.67 0.997459
Target:  5'- gGCGUGCUGUgucCGgCGCUUUgug-CGCa -3'
miRNA:   3'- -CGCGCGGCGu--GCaGCGAAAauaaGCG- -5'
30204 5' -51.1 NC_006273.1 + 1855 0.7 0.972591
Target:  5'- -gGCGCCGCaccccGCGUCGCUgcugacggccgUGCg -3'
miRNA:   3'- cgCGCGGCG-----UGCAGCGAaaauaa-----GCG- -5'
30204 5' -51.1 NC_006273.1 + 1934 0.67 0.99696
Target:  5'- gGCGCGgugcugcCCGCGCGgUgGCUgg-GUUgCGCg -3'
miRNA:   3'- -CGCGC-------GGCGUGC-AgCGAaaaUAA-GCG- -5'
30204 5' -51.1 NC_006273.1 + 2252 0.66 0.997852
Target:  5'- cCGUGCCGCGCGccaUGCUggUGguggUGCu -3'
miRNA:   3'- cGCGCGGCGUGCa--GCGAaaAUaa--GCG- -5'
30204 5' -51.1 NC_006273.1 + 2371 0.68 0.992707
Target:  5'- gGCGUGCUGgGCG-CGCUgg----CGCu -3'
miRNA:   3'- -CGCGCGGCgUGCaGCGAaaauaaGCG- -5'
30204 5' -51.1 NC_006273.1 + 2498 0.72 0.929944
Target:  5'- cGCGCGCCGCGCugugggCGCgcgagc-CGCa -3'
miRNA:   3'- -CGCGCGGCGUGca----GCGaaaauaaGCG- -5'
30204 5' -51.1 NC_006273.1 + 14679 0.66 0.998955
Target:  5'- -gGCuaccCCGUACGUgGUUUUUAUgggUCGCu -3'
miRNA:   3'- cgCGc---GGCGUGCAgCGAAAAUA---AGCG- -5'
30204 5' -51.1 NC_006273.1 + 19694 0.68 0.991656
Target:  5'- gGCGuUGCCGcCAUGUCGCUc-----CGCg -3'
miRNA:   3'- -CGC-GCGGC-GUGCAGCGAaaauaaGCG- -5'
30204 5' -51.1 NC_006273.1 + 20504 0.66 0.999032
Target:  5'- gGUGCGCCGCAgCG--GCUUUgugccgagaccgUCGCc -3'
miRNA:   3'- -CGCGCGGCGU-GCagCGAAAaua---------AGCG- -5'
30204 5' -51.1 NC_006273.1 + 23646 0.67 0.995584
Target:  5'- -gGCGCCGCaaacaucuaccucgACGUCGCgcuccg-UGCg -3'
miRNA:   3'- cgCGCGGCG--------------UGCAGCGaaaauaaGCG- -5'
30204 5' -51.1 NC_006273.1 + 27154 0.73 0.896006
Target:  5'- cGC-CGCUGC-CGUCGCUac-AUUCGCc -3'
miRNA:   3'- -CGcGCGGCGuGCAGCGAaaaUAAGCG- -5'
30204 5' -51.1 NC_006273.1 + 30984 0.69 0.985197
Target:  5'- uCGCGCCGCagcACGUCGaguaucucaaAUUCGUg -3'
miRNA:   3'- cGCGCGGCG---UGCAGCgaaaa-----UAAGCG- -5'
30204 5' -51.1 NC_006273.1 + 31840 0.66 0.998955
Target:  5'- aCGCGUCGUGCGUcagcaggaCGCcUUcAUUUGCa -3'
miRNA:   3'- cGCGCGGCGUGCA--------GCGaAAaUAAGCG- -5'
30204 5' -51.1 NC_006273.1 + 37892 0.68 0.994492
Target:  5'- -gGCGCCGgGCcUCGCgcagGUcUCGCa -3'
miRNA:   3'- cgCGCGGCgUGcAGCGaaaaUA-AGCG- -5'
30204 5' -51.1 NC_006273.1 + 37997 0.69 0.982621
Target:  5'- cGCGCGCCcacaGCGCGgcgCGCgggugcagGUgcagCGCg -3'
miRNA:   3'- -CGCGCGG----CGUGCa--GCGaaaa----UAa---GCG- -5'
30204 5' -51.1 NC_006273.1 + 38131 0.69 0.986208
Target:  5'- aGCGCGCCcaGCACGccCGCg------CGCa -3'
miRNA:   3'- -CGCGCGG--CGUGCa-GCGaaaauaaGCG- -5'
30204 5' -51.1 NC_006273.1 + 38337 0.66 0.998193
Target:  5'- uGC-CGCCGC-CGUCGCguc----CGCc -3'
miRNA:   3'- -CGcGCGGCGuGCAGCGaaaauaaGCG- -5'
30204 5' -51.1 NC_006273.1 + 38501 0.66 0.998316
Target:  5'- cCGUGCCGCucgccgcuggcggcgACGUCGUccccg-UCGCc -3'
miRNA:   3'- cGCGCGGCG---------------UGCAGCGaaaauaAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.