miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30204 5' -51.1 NC_006273.1 + 101559 0.72 0.949557
Target:  5'- -aGCGCCGUGCGcgacgggCGCggc-GUUCGCg -3'
miRNA:   3'- cgCGCGGCGUGCa------GCGaaaaUAAGCG- -5'
30204 5' -51.1 NC_006273.1 + 64819 0.72 0.930972
Target:  5'- cCGCGCCGCcuggaGUCGCg---GUUCGg -3'
miRNA:   3'- cGCGCGGCGug---CAGCGaaaaUAAGCg -5'
30204 5' -51.1 NC_006273.1 + 234121 0.72 0.935971
Target:  5'- aGCGUGCC-CGCGUCGCgcugcgaccacuugCGCa -3'
miRNA:   3'- -CGCGCGGcGUGCAGCGaaaauaa-------GCG- -5'
30204 5' -51.1 NC_006273.1 + 151834 0.72 0.940734
Target:  5'- aGCGCGUgaGCAgGUCGCgcagc-UCGCg -3'
miRNA:   3'- -CGCGCGg-CGUgCAGCGaaaauaAGCG- -5'
30204 5' -51.1 NC_006273.1 + 118770 0.72 0.943479
Target:  5'- cCGCGguaCGCACGUCGCcguccaugUCGCu -3'
miRNA:   3'- cGCGCg--GCGUGCAGCGaaaaua--AGCG- -5'
30204 5' -51.1 NC_006273.1 + 218494 0.72 0.945262
Target:  5'- uGCGUuccagccugGCCGCGCGcCGCagaccgUGUUCGUa -3'
miRNA:   3'- -CGCG---------CGGCGUGCaGCGaaa---AUAAGCG- -5'
30204 5' -51.1 NC_006273.1 + 232203 0.72 0.947008
Target:  5'- aCGCGUCGCAUGUCGCggcacaaucUgGCa -3'
miRNA:   3'- cGCGCGGCGUGCAGCGaaaaua---AgCG- -5'
30204 5' -51.1 NC_006273.1 + 76521 0.72 0.947867
Target:  5'- uGCGCGaauGCACGUCGCcgcucggCGCg -3'
miRNA:   3'- -CGCGCgg-CGUGCAGCGaaaauaaGCG- -5'
30204 5' -51.1 NC_006273.1 + 191487 0.72 0.949557
Target:  5'- -gGCGCCGC-CGcCGCUUggaccUUCGUg -3'
miRNA:   3'- cgCGCGGCGuGCaGCGAAaau--AAGCG- -5'
30204 5' -51.1 NC_006273.1 + 197391 0.72 0.929944
Target:  5'- cGCGCGCCGCGCugugggCGCgcgagc-CGCa -3'
miRNA:   3'- -CGCGCGGCGUGca----GCGaaaauaaGCG- -5'
30204 5' -51.1 NC_006273.1 + 157237 0.73 0.920261
Target:  5'- aGCGCGCCucGCACGaCGUUUgcggAUcggcUCGCg -3'
miRNA:   3'- -CGCGCGG--CGUGCaGCGAAaa--UA----AGCG- -5'
30204 5' -51.1 NC_006273.1 + 79300 0.73 0.916862
Target:  5'- cGUGCGCUcuaGCAUGUCGCgaccgaugCGCg -3'
miRNA:   3'- -CGCGCGG---CGUGCAGCGaaaauaa-GCG- -5'
30204 5' -51.1 NC_006273.1 + 101962 0.87 0.296011
Target:  5'- cGCGCGCCGuCGCGUCGCUUgacggccaCGCa -3'
miRNA:   3'- -CGCGCGGC-GUGCAGCGAAaauaa---GCG- -5'
30204 5' -51.1 NC_006273.1 + 233825 0.79 0.665254
Target:  5'- cCGCGUCGCGCGcCGCUaggaucagcgugUUGUUCGCc -3'
miRNA:   3'- cGCGCGGCGUGCaGCGAa-----------AAUAAGCG- -5'
30204 5' -51.1 NC_006273.1 + 167016 0.78 0.677425
Target:  5'- aGCGuUGCCGCACGaggCGCUg--AUUUGCa -3'
miRNA:   3'- -CGC-GCGGCGUGCa--GCGAaaaUAAGCG- -5'
30204 5' -51.1 NC_006273.1 + 162793 0.76 0.775318
Target:  5'- aGCG-GCCGCAUGUCGCUgc----CGCu -3'
miRNA:   3'- -CGCgCGGCGUGCAGCGAaaauaaGCG- -5'
30204 5' -51.1 NC_006273.1 + 220161 0.76 0.802619
Target:  5'- aCGCGCCGCACGUaGUggUUGgggUCGUc -3'
miRNA:   3'- cGCGCGGCGUGCAgCGaaAAUa--AGCG- -5'
30204 5' -51.1 NC_006273.1 + 69258 0.76 0.802619
Target:  5'- uGCGCGaCCGCcuGCGUCGuCUaUgcUUCGCg -3'
miRNA:   3'- -CGCGC-GGCG--UGCAGC-GAaAauAAGCG- -5'
30204 5' -51.1 NC_006273.1 + 137352 0.75 0.820068
Target:  5'- uGCGCGCgGCGCGUUGUcc----UCGCa -3'
miRNA:   3'- -CGCGCGgCGUGCAGCGaaaauaAGCG- -5'
30204 5' -51.1 NC_006273.1 + 148789 0.73 0.908601
Target:  5'- gGCgGCGCCGUGCGUCucaaugccacgGCUU---UUCGCg -3'
miRNA:   3'- -CG-CGCGGCGUGCAG-----------CGAAaauAAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.