Results 1 - 20 of 60 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30205 | 3' | -58.5 | NC_006273.1 | + | 30685 | 0.66 | 0.896696 |
Target: 5'- -cUCgGGGCUcGC-CGGCgacaCCCAAGGCc -3' miRNA: 3'- gaAGgUCUGA-CGuGCCG----GGGUUCCGc -5' |
|||||||
30205 | 3' | -58.5 | NC_006273.1 | + | 197816 | 0.66 | 0.896696 |
Target: 5'- ---gCAGACUGCugaaGGCCacucaacgaCGAGGCGc -3' miRNA: 3'- gaagGUCUGACGug--CCGGg--------GUUCCGC- -5' |
|||||||
30205 | 3' | -58.5 | NC_006273.1 | + | 208331 | 0.66 | 0.890328 |
Target: 5'- aCUUUCGGGCUcGC-CGGCCCUu--GCGc -3' miRNA: 3'- -GAAGGUCUGA-CGuGCCGGGGuucCGC- -5' |
|||||||
30205 | 3' | -58.5 | NC_006273.1 | + | 126749 | 0.66 | 0.890328 |
Target: 5'- -gUCCGGcaggcccugacGCUGCGCguGGUCCaGAGGCGc -3' miRNA: 3'- gaAGGUC-----------UGACGUG--CCGGGgUUCCGC- -5' |
|||||||
30205 | 3' | -58.5 | NC_006273.1 | + | 61426 | 0.66 | 0.888376 |
Target: 5'- --gCCcGGCUGCGCcucgaacucuaccaGGCCCUcGGGCa -3' miRNA: 3'- gaaGGuCUGACGUG--------------CCGGGGuUCCGc -5' |
|||||||
30205 | 3' | -58.5 | NC_006273.1 | + | 158637 | 0.66 | 0.88375 |
Target: 5'- -gUCCGaAgaGCACGGCCUCGuuGGUGa -3' miRNA: 3'- gaAGGUcUgaCGUGCCGGGGUu-CCGC- -5' |
|||||||
30205 | 3' | -58.5 | NC_006273.1 | + | 222176 | 0.66 | 0.88375 |
Target: 5'- --aCCAGACgcuguaacgccGCACGGgCCCGuagcGGGCu -3' miRNA: 3'- gaaGGUCUGa----------CGUGCCgGGGU----UCCGc -5' |
|||||||
30205 | 3' | -58.5 | NC_006273.1 | + | 90064 | 0.66 | 0.88375 |
Target: 5'- ---aCAGGCcucGCACaGCCCCGcGGCGc -3' miRNA: 3'- gaagGUCUGa--CGUGcCGGGGUuCCGC- -5' |
|||||||
30205 | 3' | -58.5 | NC_006273.1 | + | 197344 | 0.66 | 0.883081 |
Target: 5'- gCUUCauCAGACUGCGuacgcuuUGGagcgucagaCCCAGGGCGc -3' miRNA: 3'- -GAAG--GUCUGACGU-------GCCg--------GGGUUCCGC- -5' |
|||||||
30205 | 3' | -58.5 | NC_006273.1 | + | 208791 | 0.66 | 0.883081 |
Target: 5'- -aUgCAGACcaccaugUGCAUGGgCCCA-GGCGa -3' miRNA: 3'- gaAgGUCUG-------ACGUGCCgGGGUuCCGC- -5' |
|||||||
30205 | 3' | -58.5 | NC_006273.1 | + | 222505 | 0.66 | 0.876966 |
Target: 5'- aCUUCCAGAC-GUuCGGCgucgUCCAcGGCGu -3' miRNA: 3'- -GAAGGUCUGaCGuGCCG----GGGUuCCGC- -5' |
|||||||
30205 | 3' | -58.5 | NC_006273.1 | + | 177334 | 0.66 | 0.874892 |
Target: 5'- gUUCCAGGCgGCAcCGGCgaUCCAAaacgacguggaaauGGCGg -3' miRNA: 3'- gAAGGUCUGaCGU-GCCG--GGGUU--------------CCGC- -5' |
|||||||
30205 | 3' | -58.5 | NC_006273.1 | + | 49147 | 0.66 | 0.869982 |
Target: 5'- --gCCAGACgGUagACGGCgUCCAuGGCGg -3' miRNA: 3'- gaaGGUCUGaCG--UGCCG-GGGUuCCGC- -5' |
|||||||
30205 | 3' | -58.5 | NC_006273.1 | + | 85540 | 0.66 | 0.869982 |
Target: 5'- -gUCCAGACacaAgGGCCCCAcuAGGUu -3' miRNA: 3'- gaAGGUCUGacgUgCCGGGGU--UCCGc -5' |
|||||||
30205 | 3' | -58.5 | NC_006273.1 | + | 120825 | 0.66 | 0.869982 |
Target: 5'- -cUUCGGGC-GCGacgguggacuCGGCCUUAAGGCGg -3' miRNA: 3'- gaAGGUCUGaCGU----------GCCGGGGUUCCGC- -5' |
|||||||
30205 | 3' | -58.5 | NC_006273.1 | + | 66626 | 0.66 | 0.869982 |
Target: 5'- ---aCAGACUGCAagGGUCCCuucacucAGGUGg -3' miRNA: 3'- gaagGUCUGACGUg-CCGGGGu------UCCGC- -5' |
|||||||
30205 | 3' | -58.5 | NC_006273.1 | + | 220326 | 0.66 | 0.867848 |
Target: 5'- --cCCAGACUuuauuaaaaaggcaGCuCGgcacGCCCCGGGGCGu -3' miRNA: 3'- gaaGGUCUGA--------------CGuGC----CGGGGUUCCGC- -5' |
|||||||
30205 | 3' | -58.5 | NC_006273.1 | + | 44434 | 0.67 | 0.855427 |
Target: 5'- ---gUAGGaggGCAcCGuGCCCCGAGGCGg -3' miRNA: 3'- gaagGUCUga-CGU-GC-CGGGGUUCCGC- -5' |
|||||||
30205 | 3' | -58.5 | NC_006273.1 | + | 94515 | 0.67 | 0.855427 |
Target: 5'- --gCCAGGCggGCACcucgcGCCCCGAGaaGCGg -3' miRNA: 3'- gaaGGUCUGa-CGUGc----CGGGGUUC--CGC- -5' |
|||||||
30205 | 3' | -58.5 | NC_006273.1 | + | 40184 | 0.67 | 0.854679 |
Target: 5'- uCUUuuGGAggauguuCUGCACGGCgUCCGAcGGCGu -3' miRNA: 3'- -GAAggUCU-------GACGUGCCG-GGGUU-CCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home