miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30205 3' -58.5 NC_006273.1 + 112179 0.67 0.840128
Target:  5'- ---aCGuGCUGCGCuGCCCCGAGcGCGu -3'
miRNA:   3'- gaagGUcUGACGUGcCGGGGUUC-CGC- -5'
30205 3' -58.5 NC_006273.1 + 204701 0.67 0.840128
Target:  5'- -cUUgGGugUcGCcgGCGaGCCCCGAGGCGc -3'
miRNA:   3'- gaAGgUCugA-CG--UGC-CGGGGUUCCGC- -5'
30205 3' -58.5 NC_006273.1 + 176380 0.67 0.840128
Target:  5'- -aUUCGcGCUGCGagcaauCGuGCCCCAAGGUGg -3'
miRNA:   3'- gaAGGUcUGACGU------GC-CGGGGUUCCGC- -5'
30205 3' -58.5 NC_006273.1 + 170579 0.67 0.832214
Target:  5'- -cUCCAGGCgGCGCGGCacuucgucgCCCAGucuguagaccGGCa -3'
miRNA:   3'- gaAGGUCUGaCGUGCCG---------GGGUU----------CCGc -5'
30205 3' -58.5 NC_006273.1 + 79887 0.67 0.832214
Target:  5'- -gUCCuGACUGgACGGCgCagauugcaAGGGCGg -3'
miRNA:   3'- gaAGGuCUGACgUGCCGgGg-------UUCCGC- -5'
30205 3' -58.5 NC_006273.1 + 49052 0.67 0.832214
Target:  5'- uUUCCAGAC-GCACgauGGCCUCAcgccGGCc -3'
miRNA:   3'- gAAGGUCUGaCGUG---CCGGGGUu---CCGc -5'
30205 3' -58.5 NC_006273.1 + 39166 0.67 0.832214
Target:  5'- --gCCGGGCUGCgGCGGUgcUCCGAgcGGCGu -3'
miRNA:   3'- gaaGGUCUGACG-UGCCG--GGGUU--CCGC- -5'
30205 3' -58.5 NC_006273.1 + 187533 0.67 0.824132
Target:  5'- -gUCC-GACUcccgccGUACGGCgCCGAGGCc -3'
miRNA:   3'- gaAGGuCUGA------CGUGCCGgGGUUCCGc -5'
30205 3' -58.5 NC_006273.1 + 203996 0.68 0.807494
Target:  5'- cCUUCCGGug-GCGCGGUgccgaccucggaCCCAGGGaCGu -3'
miRNA:   3'- -GAAGGUCugaCGUGCCG------------GGGUUCC-GC- -5'
30205 3' -58.5 NC_006273.1 + 49885 0.68 0.804946
Target:  5'- ---aCAGACggUGCccaucugcccacgaAgGGCCCCAGGGCGc -3'
miRNA:   3'- gaagGUCUG--ACG--------------UgCCGGGGUUCCGC- -5'
30205 3' -58.5 NC_006273.1 + 140850 0.68 0.798951
Target:  5'- ---aCAGGCggUGCGCGGCCgcuucUCGGGGCGc -3'
miRNA:   3'- gaagGUCUG--ACGUGCCGG-----GGUUCCGC- -5'
30205 3' -58.5 NC_006273.1 + 16570 0.68 0.798951
Target:  5'- ---aCGGACUGC-UGGCCCUucGAGGUa -3'
miRNA:   3'- gaagGUCUGACGuGCCGGGG--UUCCGc -5'
30205 3' -58.5 NC_006273.1 + 100055 0.68 0.798951
Target:  5'- gUUCUGGACgugccucaUGuCACaGGCgCCCGAGGCGu -3'
miRNA:   3'- gAAGGUCUG--------AC-GUG-CCG-GGGUUCCGC- -5'
30205 3' -58.5 NC_006273.1 + 94959 0.68 0.781456
Target:  5'- gCUUCCGGGuCUcGCgGCGGCuCCCucucGGCGg -3'
miRNA:   3'- -GAAGGUCU-GA-CG-UGCCG-GGGuu--CCGC- -5'
30205 3' -58.5 NC_006273.1 + 24559 0.68 0.778787
Target:  5'- -gUCCGGGCuuuccuugucacguUGuCugGGCgCCCGAGGUGc -3'
miRNA:   3'- gaAGGUCUG--------------AC-GugCCG-GGGUUCCGC- -5'
30205 3' -58.5 NC_006273.1 + 145018 0.68 0.77252
Target:  5'- -cUCCAGuCgucgGCGCGGCauCCCAGcgccGGCGg -3'
miRNA:   3'- gaAGGUCuGa---CGUGCCG--GGGUU----CCGC- -5'
30205 3' -58.5 NC_006273.1 + 94116 0.68 0.77252
Target:  5'- --cCUAGGgaGCGCGaGCCCCGugccGGGCa -3'
miRNA:   3'- gaaGGUCUgaCGUGC-CGGGGU----UCCGc -5'
30205 3' -58.5 NC_006273.1 + 149438 0.69 0.763468
Target:  5'- ---aCGGGggGCgACGGCCCCGAgGGCGa -3'
miRNA:   3'- gaagGUCUgaCG-UGCCGGGGUU-CCGC- -5'
30205 3' -58.5 NC_006273.1 + 14318 0.69 0.754308
Target:  5'- -aUCCGG-CUGCGgguucUGGCCCUGAcGGCGc -3'
miRNA:   3'- gaAGGUCuGACGU-----GCCGGGGUU-CCGC- -5'
30205 3' -58.5 NC_006273.1 + 29402 0.69 0.7357
Target:  5'- -gUCgCAGGC-GUagACGGCCCCGguauAGGCGa -3'
miRNA:   3'- gaAG-GUCUGaCG--UGCCGGGGU----UCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.