Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30205 | 3' | -58.5 | NC_006273.1 | + | 3 | 0.77 | 0.315633 |
Target: 5'- aUUCCGGGCcgugUGCugGGuCCCCGagGGGCGg -3' miRNA: 3'- gAAGGUCUG----ACGugCC-GGGGU--UCCGC- -5' |
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30205 | 3' | -58.5 | NC_006273.1 | + | 241 | 0.69 | 0.720571 |
Target: 5'- --gCCAGACaagacgcggGCGCaagggaggagucgcgGGCCCCGGGGCa -3' miRNA: 3'- gaaGGUCUGa--------CGUG---------------CCGGGGUUCCGc -5' |
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30205 | 3' | -58.5 | NC_006273.1 | + | 707 | 1.09 | 0.0025 |
Target: 5'- cCUUCCAGACUGCACGGCCCCAAGGCGg -3' miRNA: 3'- -GAAGGUCUGACGUGCCGGGGUUCCGC- -5' |
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30205 | 3' | -58.5 | NC_006273.1 | + | 14318 | 0.69 | 0.754308 |
Target: 5'- -aUCCGG-CUGCGgguucUGGCCCUGAcGGCGc -3' miRNA: 3'- gaAGGUCuGACGU-----GCCGGGGUU-CCGC- -5' |
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30205 | 3' | -58.5 | NC_006273.1 | + | 16570 | 0.68 | 0.798951 |
Target: 5'- ---aCGGACUGC-UGGCCCUucGAGGUa -3' miRNA: 3'- gaagGUCUGACGuGCCGGGG--UUCCGc -5' |
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30205 | 3' | -58.5 | NC_006273.1 | + | 24559 | 0.68 | 0.778787 |
Target: 5'- -gUCCGGGCuuuccuugucacguUGuCugGGCgCCCGAGGUGc -3' miRNA: 3'- gaAGGUCUG--------------AC-GugCCG-GGGUUCCGC- -5' |
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30205 | 3' | -58.5 | NC_006273.1 | + | 29402 | 0.69 | 0.7357 |
Target: 5'- -gUCgCAGGC-GUagACGGCCCCGguauAGGCGa -3' miRNA: 3'- gaAG-GUCUGaCG--UGCCGGGGU----UCCGC- -5' |
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30205 | 3' | -58.5 | NC_006273.1 | + | 30685 | 0.66 | 0.896696 |
Target: 5'- -cUCgGGGCUcGC-CGGCgacaCCCAAGGCc -3' miRNA: 3'- gaAGgUCUGA-CGuGCCG----GGGUUCCGc -5' |
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30205 | 3' | -58.5 | NC_006273.1 | + | 33223 | 0.71 | 0.648788 |
Target: 5'- --cCCGGuaGC-GCACcgagGGCCCCGGGGCGg -3' miRNA: 3'- gaaGGUC--UGaCGUG----CCGGGGUUCCGC- -5' |
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30205 | 3' | -58.5 | NC_006273.1 | + | 38067 | 0.71 | 0.636021 |
Target: 5'- -gUCCAGcucgggcagcagccGCcGCGCGGCCUCGGcGGCGg -3' miRNA: 3'- gaAGGUC--------------UGaCGUGCCGGGGUU-CCGC- -5' |
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30205 | 3' | -58.5 | NC_006273.1 | + | 39166 | 0.67 | 0.832214 |
Target: 5'- --gCCGGGCUGCgGCGGUgcUCCGAgcGGCGu -3' miRNA: 3'- gaaGGUCUGACG-UGCCG--GGGUU--CCGC- -5' |
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30205 | 3' | -58.5 | NC_006273.1 | + | 39941 | 0.77 | 0.315633 |
Target: 5'- aUUCCGGGCcgugUGCugGGuCCCCGagGGGCGg -3' miRNA: 3'- gAAGGUCUG----ACGugCC-GGGGU--UCCGC- -5' |
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30205 | 3' | -58.5 | NC_006273.1 | + | 40179 | 0.69 | 0.720571 |
Target: 5'- --gCCAGACaagacgcggGCGCaagggaggagucgcgGGCCCCGGGGCa -3' miRNA: 3'- gaaGGUCUGa--------CGUG---------------CCGGGGUUCCGc -5' |
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30205 | 3' | -58.5 | NC_006273.1 | + | 40184 | 0.67 | 0.854679 |
Target: 5'- uCUUuuGGAggauguuCUGCACGGCgUCCGAcGGCGu -3' miRNA: 3'- -GAAggUCU-------GACGUGCCG-GGGUU-CCGC- -5' |
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30205 | 3' | -58.5 | NC_006273.1 | + | 44434 | 0.67 | 0.855427 |
Target: 5'- ---gUAGGaggGCAcCGuGCCCCGAGGCGg -3' miRNA: 3'- gaagGUCUga-CGU-GC-CGGGGUUCCGC- -5' |
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30205 | 3' | -58.5 | NC_006273.1 | + | 49052 | 0.67 | 0.832214 |
Target: 5'- uUUCCAGAC-GCACgauGGCCUCAcgccGGCc -3' miRNA: 3'- gAAGGUCUGaCGUG---CCGGGGUu---CCGc -5' |
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30205 | 3' | -58.5 | NC_006273.1 | + | 49147 | 0.66 | 0.869982 |
Target: 5'- --gCCAGACgGUagACGGCgUCCAuGGCGg -3' miRNA: 3'- gaaGGUCUGaCG--UGCCG-GGGUuCCGC- -5' |
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30205 | 3' | -58.5 | NC_006273.1 | + | 49885 | 0.68 | 0.804946 |
Target: 5'- ---aCAGACggUGCccaucugcccacgaAgGGCCCCAGGGCGc -3' miRNA: 3'- gaagGUCUG--ACG--------------UgCCGGGGUUCCGC- -5' |
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30205 | 3' | -58.5 | NC_006273.1 | + | 57195 | 0.72 | 0.560801 |
Target: 5'- --aCCAGAauCUGCACGGUgCCCGuaGGGCa -3' miRNA: 3'- gaaGGUCU--GACGUGCCG-GGGU--UCCGc -5' |
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30205 | 3' | -58.5 | NC_006273.1 | + | 61426 | 0.66 | 0.888376 |
Target: 5'- --gCCcGGCUGCGCcucgaacucuaccaGGCCCUcGGGCa -3' miRNA: 3'- gaaGGuCUGACGUG--------------CCGGGGuUCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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