miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30205 5' -53.4 NC_006273.1 + 198493 0.66 0.976729
Target:  5'- cGGCGCCGUGuucgccUACGaCGCgcaagaggacUGCCUGUAc -3'
miRNA:   3'- -UCGCGGUAU------GUGCaGCG----------ACGGAUAUu -5'
30205 5' -53.4 NC_006273.1 + 2040 0.66 0.983279
Target:  5'- cGCGCCGUGCGCGauggcaGgaGCCg---- -3'
miRNA:   3'- uCGCGGUAUGUGCag----CgaCGGauauu -5'
30205 5' -53.4 NC_006273.1 + 45983 0.66 0.979093
Target:  5'- uGGUGCC-UGCGCGU-GCUGCUa---- -3'
miRNA:   3'- -UCGCGGuAUGUGCAgCGACGGauauu -5'
30205 5' -53.4 NC_006273.1 + 1250 0.66 0.976729
Target:  5'- cGCGCCAUGCGCaagugGUCGCaGCg----- -3'
miRNA:   3'- uCGCGGUAUGUG-----CAGCGaCGgauauu -5'
30205 5' -53.4 NC_006273.1 + 37416 0.66 0.985118
Target:  5'- gAGCGCCGggGCGCGcCGCUaCUUGg-- -3'
miRNA:   3'- -UCGCGGUa-UGUGCaGCGAcGGAUauu -5'
30205 5' -53.4 NC_006273.1 + 32537 0.66 0.985118
Target:  5'- cAGCGCUgaugGCACGUUGCcgGCUUcgAAc -3'
miRNA:   3'- -UCGCGGua--UGUGCAGCGa-CGGAuaUU- -5'
30205 5' -53.4 NC_006273.1 + 196933 0.66 0.983279
Target:  5'- cGCGCCGUGCGCGauggcaGgaGCCg---- -3'
miRNA:   3'- uCGCGGUAUGUGCag----CgaCGGauauu -5'
30205 5' -53.4 NC_006273.1 + 141755 0.66 0.983279
Target:  5'- cGGCGCCAguggaUGCGCGaaGCUGCg----- -3'
miRNA:   3'- -UCGCGGU-----AUGUGCagCGACGgauauu -5'
30205 5' -53.4 NC_006273.1 + 225511 0.66 0.981273
Target:  5'- cGUGCCGUGUACGUUacucaCUGCCUGUu- -3'
miRNA:   3'- uCGCGGUAUGUGCAGc----GACGGAUAuu -5'
30205 5' -53.4 NC_006273.1 + 120876 0.66 0.979093
Target:  5'- -cCGCCGUGCACGcCGUcGCCg---- -3'
miRNA:   3'- ucGCGGUAUGUGCaGCGaCGGauauu -5'
30205 5' -53.4 NC_006273.1 + 23505 0.66 0.979093
Target:  5'- gAGCGCg--GCACGcCGUUGCCa---- -3'
miRNA:   3'- -UCGCGguaUGUGCaGCGACGGauauu -5'
30205 5' -53.4 NC_006273.1 + 136985 0.66 0.976729
Target:  5'- cGCGCCGUGCGCGacgagaucuaCGCUGUaCUAc-- -3'
miRNA:   3'- uCGCGGUAUGUGCa---------GCGACG-GAUauu -5'
30205 5' -53.4 NC_006273.1 + 196143 0.66 0.976729
Target:  5'- cGCGCCAUGCGCaagugGUCGCaGCg----- -3'
miRNA:   3'- uCGCGGUAUGUG-----CAGCGaCGgauauu -5'
30205 5' -53.4 NC_006273.1 + 69807 0.66 0.983279
Target:  5'- cAGcCGCCGUcaGCGUCGCU-CCUAc-- -3'
miRNA:   3'- -UC-GCGGUAugUGCAGCGAcGGAUauu -5'
30205 5' -53.4 NC_006273.1 + 76521 0.67 0.965299
Target:  5'- uGCGCgaAUGCACGUCGCcGCUc---- -3'
miRNA:   3'- uCGCGg-UAUGUGCAGCGaCGGauauu -5'
30205 5' -53.4 NC_006273.1 + 105475 0.67 0.958306
Target:  5'- cGGCGCC--GCAgGagaCGCUGCCUAc-- -3'
miRNA:   3'- -UCGCGGuaUGUgCa--GCGACGGAUauu -5'
30205 5' -53.4 NC_006273.1 + 207990 0.67 0.96497
Target:  5'- --aGCCAUGCugaggucuugucgGCGUCGCUGCUg---- -3'
miRNA:   3'- ucgCGGUAUG-------------UGCAGCGACGGauauu -5'
30205 5' -53.4 NC_006273.1 + 75573 0.67 0.968466
Target:  5'- cGGCGaCUGUGCGCGcCGCUGgCCa---- -3'
miRNA:   3'- -UCGC-GGUAUGUGCaGCGAC-GGauauu -5'
30205 5' -53.4 NC_006273.1 + 204734 0.67 0.971423
Target:  5'- aAGcCGCCcgGCGCGUCGuCUGUgUGc-- -3'
miRNA:   3'- -UC-GCGGuaUGUGCAGC-GACGgAUauu -5'
30205 5' -53.4 NC_006273.1 + 163162 0.67 0.958306
Target:  5'- gAGCGCCAUcuggauGCGCGcUCGCUggugGCCg---- -3'
miRNA:   3'- -UCGCGGUA------UGUGC-AGCGA----CGGauauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.