miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30205 5' -53.4 NC_006273.1 + 195634 1.06 0.009188
Target:  5'- aAGCGCCAUACACGUCGCUGCCUAUAAa -3'
miRNA:   3'- -UCGCGGUAUGUGCAGCGACGGAUAUU- -5'
30205 5' -53.4 NC_006273.1 + 742 1.06 0.009188
Target:  5'- aAGCGCCAUACACGUCGCUGCCUAUAAa -3'
miRNA:   3'- -UCGCGGUAUGUGCAGCGACGGAUAUU- -5'
30205 5' -53.4 NC_006273.1 + 1854 0.74 0.685293
Target:  5'- cGGCGCCGcacccCGCGUCGCUGCUg---- -3'
miRNA:   3'- -UCGCGGUau---GUGCAGCGACGGauauu -5'
30205 5' -53.4 NC_006273.1 + 196746 0.74 0.685293
Target:  5'- cGGCGCCGcacccCGCGUCGCUGCUg---- -3'
miRNA:   3'- -UCGCGGUau---GUGCAGCGACGGauauu -5'
30205 5' -53.4 NC_006273.1 + 138037 0.74 0.715703
Target:  5'- cGGCGCCGgcgcCugGUUGCUGCCg---- -3'
miRNA:   3'- -UCGCGGUau--GugCAGCGACGGauauu -5'
30205 5' -53.4 NC_006273.1 + 61750 0.73 0.762891
Target:  5'- gAGCGCCGUGCGCGccuucgugggugCGUUGCCg---- -3'
miRNA:   3'- -UCGCGGUAUGUGCa-----------GCGACGGauauu -5'
30205 5' -53.4 NC_006273.1 + 162792 0.72 0.783673
Target:  5'- cAGCgGCC--GCAUGUCGCUGCCg---- -3'
miRNA:   3'- -UCG-CGGuaUGUGCAGCGACGGauauu -5'
30205 5' -53.4 NC_006273.1 + 101964 0.72 0.792903
Target:  5'- cGCGCCGU-CGCGUCGCUugacgGCCa---- -3'
miRNA:   3'- uCGCGGUAuGUGCAGCGA-----CGGauauu -5'
30205 5' -53.4 NC_006273.1 + 114575 0.71 0.852897
Target:  5'- uGGCGCUcUACGCgGUCGCcuuUGCCUGg-- -3'
miRNA:   3'- -UCGCGGuAUGUG-CAGCG---ACGGAUauu -5'
30205 5' -53.4 NC_006273.1 + 171302 0.71 0.860712
Target:  5'- cGGCGCCAUuggaACGUUGC-GCCUGc-- -3'
miRNA:   3'- -UCGCGGUAug--UGCAGCGaCGGAUauu -5'
30205 5' -53.4 NC_006273.1 + 166577 0.71 0.860712
Target:  5'- cGGCGCCGccggcUACGCGuccggguuccagUCGCUGCCa---- -3'
miRNA:   3'- -UCGCGGU-----AUGUGC------------AGCGACGGauauu -5'
30205 5' -53.4 NC_006273.1 + 117837 0.71 0.860712
Target:  5'- cGGCGCCGggaUACAUGacgggCGCUGCCg---- -3'
miRNA:   3'- -UCGCGGU---AUGUGCa----GCGACGGauauu -5'
30205 5' -53.4 NC_006273.1 + 101369 0.7 0.868316
Target:  5'- cGGCgGCCGUGCGCaUCGCcUGCCUc--- -3'
miRNA:   3'- -UCG-CGGUAUGUGcAGCG-ACGGAuauu -5'
30205 5' -53.4 NC_006273.1 + 87382 0.7 0.875705
Target:  5'- cGCGCCAacACGCGgauuaacgCGCUGCCUu--- -3'
miRNA:   3'- uCGCGGUa-UGUGCa-------GCGACGGAuauu -5'
30205 5' -53.4 NC_006273.1 + 213072 0.7 0.889811
Target:  5'- cGGCGUuCGUugGCGcCGCUGCCg---- -3'
miRNA:   3'- -UCGCG-GUAugUGCaGCGACGGauauu -5'
30205 5' -53.4 NC_006273.1 + 21570 0.7 0.89652
Target:  5'- -uCGUCGUGCcCGUCgGCUGCCUGUu- -3'
miRNA:   3'- ucGCGGUAUGuGCAG-CGACGGAUAuu -5'
30205 5' -53.4 NC_006273.1 + 38910 0.69 0.907385
Target:  5'- cGCGCCGUGCcgaaccacucguccGCGUCGCgcGCCgcUAGg -3'
miRNA:   3'- uCGCGGUAUG--------------UGCAGCGa-CGGauAUU- -5'
30205 5' -53.4 NC_006273.1 + 233802 0.69 0.911657
Target:  5'- cGCGCCGUGCcgaaaccacucguccGCGUCGCgcGCCgcUAGg -3'
miRNA:   3'- uCGCGGUAUG---------------UGCAGCGa-CGGauAUU- -5'
30205 5' -53.4 NC_006273.1 + 191440 0.69 0.915226
Target:  5'- gGGCGCUgcuguugcggAUGCugGUCGUUGgCCUGa-- -3'
miRNA:   3'- -UCGCGG----------UAUGugCAGCGAC-GGAUauu -5'
30205 5' -53.4 NC_006273.1 + 36912 0.69 0.915226
Target:  5'- cGGCGCCGUACGCGUCaCgaacaCCUGg-- -3'
miRNA:   3'- -UCGCGGUAUGUGCAGcGac---GGAUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.