miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30205 5' -53.4 NC_006273.1 + 427 0.69 0.931242
Target:  5'- cGCGCC--GCACGUCGCUuuuauucGCCg---- -3'
miRNA:   3'- uCGCGGuaUGUGCAGCGA-------CGGauauu -5'
30205 5' -53.4 NC_006273.1 + 742 1.06 0.009188
Target:  5'- aAGCGCCAUACACGUCGCUGCCUAUAAa -3'
miRNA:   3'- -UCGCGGUAUGUGCAGCGACGGAUAUU- -5'
30205 5' -53.4 NC_006273.1 + 1250 0.66 0.976729
Target:  5'- cGCGCCAUGCGCaagugGUCGCaGCg----- -3'
miRNA:   3'- uCGCGGUAUGUG-----CAGCGaCGgauauu -5'
30205 5' -53.4 NC_006273.1 + 1854 0.74 0.685293
Target:  5'- cGGCGCCGcacccCGCGUCGCUGCUg---- -3'
miRNA:   3'- -UCGCGGUau---GUGCAGCGACGGauauu -5'
30205 5' -53.4 NC_006273.1 + 1926 0.69 0.931757
Target:  5'- uGGCGCUggGCGCGgUGCUGCCc---- -3'
miRNA:   3'- -UCGCGGuaUGUGCaGCGACGGauauu -5'
30205 5' -53.4 NC_006273.1 + 2040 0.66 0.983279
Target:  5'- cGCGCCGUGCGCGauggcaGgaGCCg---- -3'
miRNA:   3'- uCGCGGUAUGUGCag----CgaCGGauauu -5'
30205 5' -53.4 NC_006273.1 + 2260 0.68 0.946103
Target:  5'- cGCGCCAUGCugGUgGUggUGCUg---- -3'
miRNA:   3'- uCGCGGUAUGugCAgCG--ACGGauauu -5'
30205 5' -53.4 NC_006273.1 + 21570 0.7 0.89652
Target:  5'- -uCGUCGUGCcCGUCgGCUGCCUGUu- -3'
miRNA:   3'- ucGCGGUAUGuGCAG-CGACGGAUAuu -5'
30205 5' -53.4 NC_006273.1 + 23505 0.66 0.979093
Target:  5'- gAGCGCg--GCACGcCGUUGCCa---- -3'
miRNA:   3'- -UCGCGguaUGUGCaGCGACGGauauu -5'
30205 5' -53.4 NC_006273.1 + 30034 0.68 0.950405
Target:  5'- aGGCGCUGUACAUucUGCUGCCc---- -3'
miRNA:   3'- -UCGCGGUAUGUGcaGCGACGGauauu -5'
30205 5' -53.4 NC_006273.1 + 30856 0.69 0.915226
Target:  5'- uGGCGCCAggugaGC-CGUcCGCUGCCg---- -3'
miRNA:   3'- -UCGCGGUa----UGuGCA-GCGACGGauauu -5'
30205 5' -53.4 NC_006273.1 + 32537 0.66 0.985118
Target:  5'- cAGCGCUgaugGCACGUUGCcgGCUUcgAAc -3'
miRNA:   3'- -UCGCGGua--UGUGCAGCGa-CGGAuaUU- -5'
30205 5' -53.4 NC_006273.1 + 36912 0.69 0.915226
Target:  5'- cGGCGCCGUACGCGUCaCgaacaCCUGg-- -3'
miRNA:   3'- -UCGCGGUAUGUGCAGcGac---GGAUauu -5'
30205 5' -53.4 NC_006273.1 + 37416 0.66 0.985118
Target:  5'- gAGCGCCGggGCGCGcCGCUaCUUGg-- -3'
miRNA:   3'- -UCGCGGUa-UGUGCaGCGAcGGAUauu -5'
30205 5' -53.4 NC_006273.1 + 38910 0.69 0.907385
Target:  5'- cGCGCCGUGCcgaaccacucguccGCGUCGCgcGCCgcUAGg -3'
miRNA:   3'- uCGCGGUAUG--------------UGCAGCGa-CGGauAUU- -5'
30205 5' -53.4 NC_006273.1 + 45983 0.66 0.979093
Target:  5'- uGGUGCC-UGCGCGU-GCUGCUa---- -3'
miRNA:   3'- -UCGCGGuAUGUGCAgCGACGGauauu -5'
30205 5' -53.4 NC_006273.1 + 61750 0.73 0.762891
Target:  5'- gAGCGCCGUGCGCGccuucgugggugCGUUGCCg---- -3'
miRNA:   3'- -UCGCGGUAUGUGCa-----------GCGACGGauauu -5'
30205 5' -53.4 NC_006273.1 + 68059 0.67 0.961914
Target:  5'- cAGCGCCGccgugGC-CGcCGCUGCCg---- -3'
miRNA:   3'- -UCGCGGUa----UGuGCaGCGACGGauauu -5'
30205 5' -53.4 NC_006273.1 + 69807 0.66 0.983279
Target:  5'- cAGcCGCCGUcaGCGUCGCU-CCUAc-- -3'
miRNA:   3'- -UC-GCGGUAugUGCAGCGAcGGAUauu -5'
30205 5' -53.4 NC_006273.1 + 70327 0.67 0.965299
Target:  5'- cGCGCCGUGCGucugccCGUgagcacCGCUGCCg---- -3'
miRNA:   3'- uCGCGGUAUGU------GCA------GCGACGGauauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.