miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30205 5' -53.4 NC_006273.1 + 154559 0.67 0.965299
Target:  5'- uGCGCCccgcgGCcgACGUCGUUGCCa---- -3'
miRNA:   3'- uCGCGGua---UG--UGCAGCGACGGauauu -5'
30205 5' -53.4 NC_006273.1 + 184936 0.69 0.931757
Target:  5'- cGGCGuCCAggaugaGCuCGUCGCUGCCg---- -3'
miRNA:   3'- -UCGC-GGUa-----UGuGCAGCGACGGauauu -5'
30205 5' -53.4 NC_006273.1 + 196818 0.69 0.931757
Target:  5'- uGGCGCUggGCGCGgUGCUGCCc---- -3'
miRNA:   3'- -UCGCGGuaUGUGCaGCGACGGauauu -5'
30205 5' -53.4 NC_006273.1 + 130292 0.68 0.936781
Target:  5'- aAGCGCCGUGCGCGUUGgacGCUa---- -3'
miRNA:   3'- -UCGCGGUAUGUGCAGCga-CGGauauu -5'
30205 5' -53.4 NC_006273.1 + 118782 0.68 0.941562
Target:  5'- cGuCGCCGUcCAUGUCGCUGCgcagAUAAg -3'
miRNA:   3'- uC-GCGGUAuGUGCAGCGACGga--UAUU- -5'
30205 5' -53.4 NC_006273.1 + 197153 0.68 0.946103
Target:  5'- cGCGCCAUGCugGUgGUggUGCUg---- -3'
miRNA:   3'- uCGCGGUAUGugCAgCG--ACGGauauu -5'
30205 5' -53.4 NC_006273.1 + 101558 0.68 0.954471
Target:  5'- aAGCGCCGUGCGCGacgggCGCgGCg----- -3'
miRNA:   3'- -UCGCGGUAUGUGCa----GCGaCGgauauu -5'
30205 5' -53.4 NC_006273.1 + 105475 0.67 0.958306
Target:  5'- cGGCGCC--GCAgGagaCGCUGCCUAc-- -3'
miRNA:   3'- -UCGCGGuaUGUgCa--GCGACGGAUauu -5'
30205 5' -53.4 NC_006273.1 + 76521 0.67 0.965299
Target:  5'- uGCGCgaAUGCACGUCGCcGCUc---- -3'
miRNA:   3'- uCGCGg-UAUGUGCAGCGaCGGauauu -5'
30205 5' -53.4 NC_006273.1 + 195320 0.69 0.931242
Target:  5'- cGCGCC--GCACGUCGCUuuuauucGCCg---- -3'
miRNA:   3'- uCGCGGuaUGUGCAGCGA-------CGGauauu -5'
30205 5' -53.4 NC_006273.1 + 36912 0.69 0.915226
Target:  5'- cGGCGCCGUACGCGUCaCgaacaCCUGg-- -3'
miRNA:   3'- -UCGCGGUAUGUGCAGcGac---GGAUauu -5'
30205 5' -53.4 NC_006273.1 + 30856 0.69 0.915226
Target:  5'- uGGCGCCAggugaGC-CGUcCGCUGCCg---- -3'
miRNA:   3'- -UCGCGGUa----UGuGCA-GCGACGGauauu -5'
30205 5' -53.4 NC_006273.1 + 196746 0.74 0.685293
Target:  5'- cGGCGCCGcacccCGCGUCGCUGCUg---- -3'
miRNA:   3'- -UCGCGGUau---GUGCAGCGACGGauauu -5'
30205 5' -53.4 NC_006273.1 + 138037 0.74 0.715703
Target:  5'- cGGCGCCGgcgcCugGUUGCUGCCg---- -3'
miRNA:   3'- -UCGCGGUau--GugCAGCGACGGauauu -5'
30205 5' -53.4 NC_006273.1 + 61750 0.73 0.762891
Target:  5'- gAGCGCCGUGCGCGccuucgugggugCGUUGCCg---- -3'
miRNA:   3'- -UCGCGGUAUGUGCa-----------GCGACGGauauu -5'
30205 5' -53.4 NC_006273.1 + 162792 0.72 0.783673
Target:  5'- cAGCgGCC--GCAUGUCGCUGCCg---- -3'
miRNA:   3'- -UCG-CGGuaUGUGCAGCGACGGauauu -5'
30205 5' -53.4 NC_006273.1 + 101964 0.72 0.792903
Target:  5'- cGCGCCGU-CGCGUCGCUugacgGCCa---- -3'
miRNA:   3'- uCGCGGUAuGUGCAGCGA-----CGGauauu -5'
30205 5' -53.4 NC_006273.1 + 114575 0.71 0.852897
Target:  5'- uGGCGCUcUACGCgGUCGCcuuUGCCUGg-- -3'
miRNA:   3'- -UCGCGGuAUGUG-CAGCG---ACGGAUauu -5'
30205 5' -53.4 NC_006273.1 + 233802 0.69 0.911657
Target:  5'- cGCGCCGUGCcgaaaccacucguccGCGUCGCgcGCCgcUAGg -3'
miRNA:   3'- uCGCGGUAUG---------------UGCAGCGa-CGGauAUU- -5'
30205 5' -53.4 NC_006273.1 + 191440 0.69 0.915226
Target:  5'- gGGCGCUgcuguugcggAUGCugGUCGUUGgCCUGa-- -3'
miRNA:   3'- -UCGCGG----------UAUGugCAGCGAC-GGAUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.