Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30206 | 5' | -52.1 | NC_006273.1 | + | 227289 | 0.66 | 0.994571 |
Target: 5'- gGCUUGUUGCUccucCUgGGAUUgCUGGUGc -3' miRNA: 3'- -CGGACAACGAca--GAgUCUAA-GGCCAC- -5' |
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30206 | 5' | -52.1 | NC_006273.1 | + | 226918 | 0.66 | 0.992798 |
Target: 5'- cUCUGUaguacuCUGUCUCGGcUUCCGGUu -3' miRNA: 3'- cGGACAac----GACAGAGUCuAAGGCCAc -5' |
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30206 | 5' | -52.1 | NC_006273.1 | + | 1506 | 0.68 | 0.982739 |
Target: 5'- aCCUGgcGCUGggcgC-CGGGUUCCGcGUGu -3' miRNA: 3'- cGGACaaCGACa---GaGUCUAAGGC-CAC- -5' |
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30206 | 5' | -52.1 | NC_006273.1 | + | 196399 | 0.68 | 0.982739 |
Target: 5'- aCCUGgcGCUGggcgC-CGGGUUCCGcGUGu -3' miRNA: 3'- cGGACaaCGACa---GaGUCUAAGGC-CAC- -5' |
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30206 | 5' | -52.1 | NC_006273.1 | + | 191435 | 0.68 | 0.978492 |
Target: 5'- cGCCUGggcgcUGCUGUUgCGGAUgCUGGUc -3' miRNA: 3'- -CGGACa----ACGACAGaGUCUAaGGCCAc -5' |
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30206 | 5' | -52.1 | NC_006273.1 | + | 185646 | 0.7 | 0.949608 |
Target: 5'- aGCa-GUUGCUGcgaaUCUCGGcgUUCGGUGu -3' miRNA: 3'- -CGgaCAACGAC----AGAGUCuaAGGCCAC- -5' |
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30206 | 5' | -52.1 | NC_006273.1 | + | 21259 | 0.7 | 0.949608 |
Target: 5'- aGCgaGUggggcaacUGCUGUCUC-GAUgcgccUCCGGUGg -3' miRNA: 3'- -CGgaCA--------ACGACAGAGuCUA-----AGGCCAC- -5' |
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30206 | 5' | -52.1 | NC_006273.1 | + | 188847 | 0.71 | 0.930946 |
Target: 5'- aGCCcgacgGUgcgcgGCaGUCUCGGAUUCCgcGGUGg -3' miRNA: 3'- -CGGa----CAa----CGaCAGAGUCUAAGG--CCAC- -5' |
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30206 | 5' | -52.1 | NC_006273.1 | + | 166754 | 0.71 | 0.925684 |
Target: 5'- aGCU---UGCUGUUgCAGGUUCCGGUa -3' miRNA: 3'- -CGGacaACGACAGaGUCUAAGGCCAc -5' |
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30206 | 5' | -52.1 | NC_006273.1 | + | 1142 | 1.12 | 0.006491 |
Target: 5'- cGCCUGUUGCUGUCUCAGAUUCCGGUGg -3' miRNA: 3'- -CGGACAACGACAGAGUCUAAGGCCAC- -5' |
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30206 | 5' | -52.1 | NC_006273.1 | + | 196035 | 1.12 | 0.006491 |
Target: 5'- cGCCUGUUGCUGUCUCAGAUUCCGGUGg -3' miRNA: 3'- -CGGACAACGACAGAGUCUAAGGCCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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