miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30207 3' -48.4 NC_006273.1 + 161118 0.66 0.999892
Target:  5'- ------aGAGCCGCaCAGACcacguGCCUUg -3'
miRNA:   3'- cuuuguaUUCGGCG-GUCUGuu---UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 150760 0.66 0.999892
Target:  5'- --uGCAgaucAGCCGCCGGGCGcuguggugcagcAGCCg- -3'
miRNA:   3'- cuuUGUau--UCGGCGGUCUGU------------UUGGag -5'
30207 3' -48.4 NC_006273.1 + 3455 0.66 0.99986
Target:  5'- aGGAGCGUGuccGCCGCCGGGaagguGGUCUCu -3'
miRNA:   3'- -CUUUGUAUu--CGGCGGUCUgu---UUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 147858 0.66 0.999769
Target:  5'- aGAGACAgagaccGCCGCCGcgcuGGCAAACUcCg -3'
miRNA:   3'- -CUUUGUauu---CGGCGGU----CUGUUUGGaG- -5'
30207 3' -48.4 NC_006273.1 + 12568 0.66 0.999706
Target:  5'- --uGCucu-GCgGCCAGGCcgaGAACCUCa -3'
miRNA:   3'- cuuUGuauuCGgCGGUCUG---UUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 90618 0.66 0.999769
Target:  5'- cGAGGCcacGGCCGCCGcGuCGuGCCUCc -3'
miRNA:   3'- -CUUUGuauUCGGCGGU-CuGUuUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 31450 0.66 0.999763
Target:  5'- -uGGCG-AAGCCGCCaugAGGCGGuggcugcGCCUCc -3'
miRNA:   3'- cuUUGUaUUCGGCGG---UCUGUU-------UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 100833 0.66 0.999706
Target:  5'- -cGGgGUAGGgUGCCAGACGuaGACuCUCg -3'
miRNA:   3'- cuUUgUAUUCgGCGGUCUGU--UUG-GAG- -5'
30207 3' -48.4 NC_006273.1 + 158760 0.66 0.999706
Target:  5'- aAGACAagAGGCCGCCGGcCGcGGCCa- -3'
miRNA:   3'- cUUUGUa-UUCGGCGGUCuGU-UUGGag -5'
30207 3' -48.4 NC_006273.1 + 167057 0.66 0.999892
Target:  5'- uGGAGuCGUGcAGCCGCaugAGACGugacACCUCu -3'
miRNA:   3'- -CUUU-GUAU-UCGGCGg--UCUGUu---UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 177509 0.66 0.999819
Target:  5'- cGGGCGUGuGgCGCCAG-CGAACCg- -3'
miRNA:   3'- cUUUGUAUuCgGCGGUCuGUUUGGag -5'
30207 3' -48.4 NC_006273.1 + 4521 0.66 0.999815
Target:  5'- aGAAGCcgAccGGCCGCCgacccguuccccaGGACcAGCCUa -3'
miRNA:   3'- -CUUUGuaU--UCGGCGG-------------UCUGuUUGGAg -5'
30207 3' -48.4 NC_006273.1 + 150939 0.66 0.999769
Target:  5'- -cAGCGguguuUGAGCCG-CAGAUccgaGAGCCUCa -3'
miRNA:   3'- cuUUGU-----AUUCGGCgGUCUG----UUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 210001 0.66 0.999706
Target:  5'- cAGACugcGGGUCGCCAGcCGggUCUCu -3'
miRNA:   3'- cUUUGua-UUCGGCGGUCuGUuuGGAG- -5'
30207 3' -48.4 NC_006273.1 + 134858 0.66 0.999706
Target:  5'- uGAGCcagGUGAGCCGCCAgGugAGGCgggaUCg -3'
miRNA:   3'- cUUUG---UAUUCGGCGGU-CugUUUGg---AG- -5'
30207 3' -48.4 NC_006273.1 + 230417 0.66 0.999805
Target:  5'- uGAAACAUAAagccaaagcGCCGUCGGcacuuggcuucagaGCAGcGCCUCg -3'
miRNA:   3'- -CUUUGUAUU---------CGGCGGUC--------------UGUU-UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 5148 0.66 0.999819
Target:  5'- ---uCAUGAGuuGCCucauGAUAAACCg- -3'
miRNA:   3'- cuuuGUAUUCggCGGu---CUGUUUGGag -5'
30207 3' -48.4 NC_006273.1 + 30120 0.66 0.999819
Target:  5'- ---cCGUGAG-CGCCAGGCuAGCCa- -3'
miRNA:   3'- cuuuGUAUUCgGCGGUCUGuUUGGag -5'
30207 3' -48.4 NC_006273.1 + 1791 0.66 0.999892
Target:  5'- cGGAAcCAUGGGCCGCCAaccuGuCGucACCUUa -3'
miRNA:   3'- -CUUU-GUAUUCGGCGGU----CuGUu-UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 102080 0.66 0.999819
Target:  5'- cGAGCAgcGGCgGCCAcacgcgggugacGACGAGCCg- -3'
miRNA:   3'- cUUUGUauUCGgCGGU------------CUGUUUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.