miRNA display CGI


Results 21 - 40 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30207 3' -48.4 NC_006273.1 + 4521 0.66 0.999815
Target:  5'- aGAAGCcgAccGGCCGCCgacccguuccccaGGACcAGCCUa -3'
miRNA:   3'- -CUUUGuaU--UCGGCGG-------------UCUGuUUGGAg -5'
30207 3' -48.4 NC_006273.1 + 230417 0.66 0.999805
Target:  5'- uGAAACAUAAagccaaagcGCCGUCGGcacuuggcuucagaGCAGcGCCUCg -3'
miRNA:   3'- -CUUUGUAUU---------CGGCGGUC--------------UGUU-UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 90618 0.66 0.999769
Target:  5'- cGAGGCcacGGCCGCCGcGuCGuGCCUCc -3'
miRNA:   3'- -CUUUGuauUCGGCGGU-CuGUuUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 1791 0.66 0.999892
Target:  5'- cGGAAcCAUGGGCCGCCAaccuGuCGucACCUUa -3'
miRNA:   3'- -CUUU-GUAUUCGGCGGU----CuGUu-UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 3455 0.66 0.99986
Target:  5'- aGGAGCGUGuccGCCGCCGGGaagguGGUCUCu -3'
miRNA:   3'- -CUUUGUAUu--CGGCGGUCUgu---UUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 102080 0.66 0.999819
Target:  5'- cGAGCAgcGGCgGCCAcacgcgggugacGACGAGCCg- -3'
miRNA:   3'- cUUUGUauUCGgCGGU------------CUGUUUGGag -5'
30207 3' -48.4 NC_006273.1 + 177509 0.66 0.999819
Target:  5'- cGGGCGUGuGgCGCCAG-CGAACCg- -3'
miRNA:   3'- cUUUGUAUuCgGCGGUCuGUUUGGag -5'
30207 3' -48.4 NC_006273.1 + 30120 0.66 0.999819
Target:  5'- ---cCGUGAG-CGCCAGGCuAGCCa- -3'
miRNA:   3'- cuuuGUAUUCgGCGGUCUGuUUGGag -5'
30207 3' -48.4 NC_006273.1 + 123440 0.67 0.999384
Target:  5'- cGAACGUGAGUucuggcagaugcagCGCCAGACAGucguguaacGCCg- -3'
miRNA:   3'- cUUUGUAUUCG--------------GCGGUCUGUU---------UGGag -5'
30207 3' -48.4 NC_006273.1 + 213045 0.67 0.99963
Target:  5'- --cACAcGAGCC-CguGAUAGACCUCc -3'
miRNA:   3'- cuuUGUaUUCGGcGguCUGUUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 42225 0.67 0.99963
Target:  5'- -cAGCGUGGGCUucggcggccgguGCCAGAgAAccauggGCCUCg -3'
miRNA:   3'- cuUUGUAUUCGG------------CGGUCUgUU------UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 174281 0.67 0.999121
Target:  5'- ---cCAUGAGCCGCUGGaggcaugggaGCAGGgCUCg -3'
miRNA:   3'- cuuuGUAUUCGGCGGUC----------UGUUUgGAG- -5'
30207 3' -48.4 NC_006273.1 + 115492 0.67 0.999536
Target:  5'- aGGGCGcGGGCgGCCAGuAC-GGCCUCu -3'
miRNA:   3'- cUUUGUaUUCGgCGGUC-UGuUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 175160 0.67 0.999285
Target:  5'- uGGGCAUAA--UGCCAGGCGGGCCa- -3'
miRNA:   3'- cUUUGUAUUcgGCGGUCUGUUUGGag -5'
30207 3' -48.4 NC_006273.1 + 121990 0.67 0.99963
Target:  5'- -cAACAgcaGGCCaGCCAGGCAggUCa- -3'
miRNA:   3'- cuUUGUau-UCGG-CGGUCUGUuuGGag -5'
30207 3' -48.4 NC_006273.1 + 56573 0.67 0.999536
Target:  5'- --cGCGUucggguuGCUGCuuCAGAUAGACCUCa -3'
miRNA:   3'- cuuUGUAuu-----CGGCG--GUCUGUUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 133723 0.67 0.999536
Target:  5'- --uACAUcAGCgGCCAGAacguGACCUUc -3'
miRNA:   3'- cuuUGUAuUCGgCGGUCUgu--UUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 181462 0.67 0.999422
Target:  5'- -cGACGUGuacuGCUGCC-GcCAGACCUCc -3'
miRNA:   3'- cuUUGUAUu---CGGCGGuCuGUUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 183017 0.67 0.999422
Target:  5'- ---uCAUGAGCCuGCUGGACGAgGCCg- -3'
miRNA:   3'- cuuuGUAUUCGG-CGGUCUGUU-UGGag -5'
30207 3' -48.4 NC_006273.1 + 45414 0.67 0.999285
Target:  5'- aGAAAgGUAGGgCGaaAGACAAACCg- -3'
miRNA:   3'- -CUUUgUAUUCgGCggUCUGUUUGGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.