Results 1 - 20 of 103 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30207 | 3' | -48.4 | NC_006273.1 | + | 198002 | 1.1 | 0.018501 |
Target: 5'- aGAAACAUAAGCCGCCAGACAAACCUCc -3' miRNA: 3'- -CUUUGUAUUCGGCGGUCUGUUUGGAG- -5' |
|||||||
30207 | 3' | -48.4 | NC_006273.1 | + | 75257 | 0.8 | 0.720951 |
Target: 5'- cGAAGCGcuGGCCGCCGcGGCGGccGCCUCa -3' miRNA: 3'- -CUUUGUauUCGGCGGU-CUGUU--UGGAG- -5' |
|||||||
30207 | 3' | -48.4 | NC_006273.1 | + | 35458 | 0.76 | 0.883364 |
Target: 5'- cAAGCGggcGAGCCGcCCAGGCGGAUCUUg -3' miRNA: 3'- cUUUGUa--UUCGGC-GGUCUGUUUGGAG- -5' |
|||||||
30207 | 3' | -48.4 | NC_006273.1 | + | 115123 | 0.75 | 0.910396 |
Target: 5'- cGAGGCcgAAGCCGCCAGcGgAAGCUUUg -3' miRNA: 3'- -CUUUGuaUUCGGCGGUC-UgUUUGGAG- -5' |
|||||||
30207 | 3' | -48.4 | NC_006273.1 | + | 22118 | 0.75 | 0.916523 |
Target: 5'- gGAAACu---GCCGCgGGAgAAGCCUCu -3' miRNA: 3'- -CUUUGuauuCGGCGgUCUgUUUGGAG- -5' |
|||||||
30207 | 3' | -48.4 | NC_006273.1 | + | 94504 | 0.75 | 0.916523 |
Target: 5'- -cGACG-AGGCCgGCCAGGCGGgcACCUCg -3' miRNA: 3'- cuUUGUaUUCGG-CGGUCUGUU--UGGAG- -5' |
|||||||
30207 | 3' | -48.4 | NC_006273.1 | + | 105399 | 0.75 | 0.922392 |
Target: 5'- -cAACAgcAGCCGCCGGuCGAGCC-Cg -3' miRNA: 3'- cuUUGUauUCGGCGGUCuGUUUGGaG- -5' |
|||||||
30207 | 3' | -48.4 | NC_006273.1 | + | 95307 | 0.74 | 0.933355 |
Target: 5'- -cGACgGUGGGCCGCCAuGAC--ACCUCa -3' miRNA: 3'- cuUUG-UAUUCGGCGGU-CUGuuUGGAG- -5' |
|||||||
30207 | 3' | -48.4 | NC_006273.1 | + | 130069 | 0.74 | 0.947868 |
Target: 5'- ---cCAgcAGCCGCUGGuCGAACCUCa -3' miRNA: 3'- cuuuGUauUCGGCGGUCuGUUUGGAG- -5' |
|||||||
30207 | 3' | -48.4 | NC_006273.1 | + | 50672 | 0.73 | 0.952199 |
Target: 5'- gGAGACGcucAGCCgGCCcGACGAACCUUg -3' miRNA: 3'- -CUUUGUau-UCGG-CGGuCUGUUUGGAG- -5' |
|||||||
30207 | 3' | -48.4 | NC_006273.1 | + | 39624 | 0.73 | 0.952199 |
Target: 5'- uGGGCcauGGCCGCCGGAC--ACCUCc -3' miRNA: 3'- cUUUGuauUCGGCGGUCUGuuUGGAG- -5' |
|||||||
30207 | 3' | -48.4 | NC_006273.1 | + | 4645 | 0.73 | 0.956281 |
Target: 5'- --uACcgGAGCCcCCAGACAGGCCg- -3' miRNA: 3'- cuuUGuaUUCGGcGGUCUGUUUGGag -5' |
|||||||
30207 | 3' | -48.4 | NC_006273.1 | + | 142724 | 0.73 | 0.960119 |
Target: 5'- --cGCGUAAGCacaGCgAGACGGugCUCa -3' miRNA: 3'- cuuUGUAUUCGg--CGgUCUGUUugGAG- -5' |
|||||||
30207 | 3' | -48.4 | NC_006273.1 | + | 167387 | 0.73 | 0.963719 |
Target: 5'- ---cCAUGAcGCCGCCGGGCAGAgCgUCg -3' miRNA: 3'- cuuuGUAUU-CGGCGGUCUGUUU-GgAG- -5' |
|||||||
30207 | 3' | -48.4 | NC_006273.1 | + | 228754 | 0.72 | 0.973143 |
Target: 5'- uGAGACG-AGGCCGCCGcccGACAaguucGAUCUCa -3' miRNA: 3'- -CUUUGUaUUCGGCGGU---CUGU-----UUGGAG- -5' |
|||||||
30207 | 3' | -48.4 | NC_006273.1 | + | 195972 | 0.72 | 0.975848 |
Target: 5'- --cGCG--GGCCGCCGGGCGccCCUCc -3' miRNA: 3'- cuuUGUauUCGGCGGUCUGUuuGGAG- -5' |
|||||||
30207 | 3' | -48.4 | NC_006273.1 | + | 1079 | 0.72 | 0.975848 |
Target: 5'- --cGCG--GGCCGCCGGGCGccCCUCc -3' miRNA: 3'- cuuUGUauUCGGCGGUCUGUuuGGAG- -5' |
|||||||
30207 | 3' | -48.4 | NC_006273.1 | + | 38075 | 0.72 | 0.978349 |
Target: 5'- cGGGCAgcAGCCGCCGcGC-GGCCUCg -3' miRNA: 3'- cUUUGUauUCGGCGGUcUGuUUGGAG- -5' |
|||||||
30207 | 3' | -48.4 | NC_006273.1 | + | 232968 | 0.72 | 0.978349 |
Target: 5'- cGGGCAgcAGCCGCCGcGC-GGCCUCg -3' miRNA: 3'- cUUUGUauUCGGCGGUcUGuUUGGAG- -5' |
|||||||
30207 | 3' | -48.4 | NC_006273.1 | + | 163850 | 0.72 | 0.980654 |
Target: 5'- -cGGCAgcGGCCGCCGG-CGAGggcCCUCg -3' miRNA: 3'- cuUUGUauUCGGCGGUCuGUUU---GGAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home