miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30207 3' -48.4 NC_006273.1 + 2016 0.71 0.982769
Target:  5'- gGAGACGgAGGCCGCCggcggGGACGcGCCg- -3'
miRNA:   3'- -CUUUGUaUUCGGCGG-----UCUGUuUGGag -5'
30207 3' -48.4 NC_006273.1 + 196909 0.71 0.982769
Target:  5'- gGAGACGgAGGCCGCCggcggGGACGcGCCg- -3'
miRNA:   3'- -CUUUGUaUUCGGCGG-----UCUGUuUGGag -5'
30207 3' -48.4 NC_006273.1 + 97905 0.71 0.984706
Target:  5'- aGAGACGgcaAAGCCGCCcGGCAGcACC-Ca -3'
miRNA:   3'- -CUUUGUa--UUCGGCGGuCUGUU-UGGaG- -5'
30207 3' -48.4 NC_006273.1 + 96604 0.71 0.986472
Target:  5'- aGGAC---AGCCGCCGGAgAAGCCg- -3'
miRNA:   3'- cUUUGuauUCGGCGGUCUgUUUGGag -5'
30207 3' -48.4 NC_006273.1 + 205352 0.71 0.986472
Target:  5'- ---cCGUGgucuGGCCGCCGGGCugGAACCUa -3'
miRNA:   3'- cuuuGUAU----UCGGCGGUCUG--UUUGGAg -5'
30207 3' -48.4 NC_006273.1 + 59068 0.71 0.986472
Target:  5'- ------aGAGCCGCCgggAGACAGGCCg- -3'
miRNA:   3'- cuuuguaUUCGGCGG---UCUGUUUGGag -5'
30207 3' -48.4 NC_006273.1 + 177146 0.71 0.988078
Target:  5'- uGggGCGUGAcGCCGUCAGuguGGGCUUCg -3'
miRNA:   3'- -CuuUGUAUU-CGGCGGUCug-UUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 90991 0.71 0.989532
Target:  5'- cGGGCAgacAGCCGCU-GACGAagGCCUCg -3'
miRNA:   3'- cUUUGUau-UCGGCGGuCUGUU--UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 211218 0.7 0.990843
Target:  5'- -uGGgGUAGGCCGCCgAGACGuuAGCCa- -3'
miRNA:   3'- cuUUgUAUUCGGCGG-UCUGU--UUGGag -5'
30207 3' -48.4 NC_006273.1 + 133921 0.7 0.992022
Target:  5'- cGGAACGgagcAGCCGCCAG-CGAauaccAUCUCg -3'
miRNA:   3'- -CUUUGUau--UCGGCGGUCuGUU-----UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 94380 0.7 0.993077
Target:  5'- cGggGcCGUGGGCCGggcaCCGGGCGcggcccgcuccgGACCUCg -3'
miRNA:   3'- -CuuU-GUAUUCGGC----GGUCUGU------------UUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 80833 0.7 0.994017
Target:  5'- -cGACGU-GGCCGCgGGGCGcagcGCCUCc -3'
miRNA:   3'- cuUUGUAuUCGGCGgUCUGUu---UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 115806 0.7 0.994017
Target:  5'- --cGCGUGaagaaGGCCGCCAGACGAAa--- -3'
miRNA:   3'- cuuUGUAU-----UCGGCGGUCUGUUUggag -5'
30207 3' -48.4 NC_006273.1 + 108642 0.7 0.994852
Target:  5'- -cAGCGUcaGGGCCuGCCGGACuuuAUCUCa -3'
miRNA:   3'- cuUUGUA--UUCGG-CGGUCUGuu-UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 52088 0.69 0.99559
Target:  5'- uGAcGCGUGGGCCGCaCcGAagcuuccuccCAGGCCUCg -3'
miRNA:   3'- -CUuUGUAUUCGGCG-GuCU----------GUUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 210927 0.69 0.99559
Target:  5'- aGGAGCA--AGCCGgcgauUCGGACGAcaACCUCg -3'
miRNA:   3'- -CUUUGUauUCGGC-----GGUCUGUU--UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 40494 0.69 0.99559
Target:  5'- cGAGGCGgcccggcuGCUGCCGGACAGGCg-- -3'
miRNA:   3'- -CUUUGUauu-----CGGCGGUCUGUUUGgag -5'
30207 3' -48.4 NC_006273.1 + 148333 0.69 0.996239
Target:  5'- -cGACG-AGGCCGuCCuGGCAcGCCUCu -3'
miRNA:   3'- cuUUGUaUUCGGC-GGuCUGUuUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 169627 0.69 0.996239
Target:  5'- uGGAugAUGAGCUGCUggAGACGAucggugaggaaGCUUCg -3'
miRNA:   3'- -CUUugUAUUCGGCGG--UCUGUU-----------UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 87372 0.69 0.996808
Target:  5'- cGAAGCuguuGCCGCCGcuugcGGCGcAACCUCc -3'
miRNA:   3'- -CUUUGuauuCGGCGGU-----CUGU-UUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.