miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30207 3' -48.4 NC_006273.1 + 147858 0.66 0.999769
Target:  5'- aGAGACAgagaccGCCGCCGcgcuGGCAAACUcCg -3'
miRNA:   3'- -CUUUGUauu---CGGCGGU----CUGUUUGGaG- -5'
30207 3' -48.4 NC_006273.1 + 162799 0.66 0.999763
Target:  5'- --cGCAUGucgcuGCCGCUGGACAcgucugaagcgguGGCCUUu -3'
miRNA:   3'- cuuUGUAUu----CGGCGGUCUGU-------------UUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 31450 0.66 0.999763
Target:  5'- -uGGCG-AAGCCGCCaugAGGCGGuggcugcGCCUCc -3'
miRNA:   3'- cuUUGUaUUCGGCGG---UCUGUU-------UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 100833 0.66 0.999706
Target:  5'- -cGGgGUAGGgUGCCAGACGuaGACuCUCg -3'
miRNA:   3'- cuUUgUAUUCgGCGGUCUGU--UUG-GAG- -5'
30207 3' -48.4 NC_006273.1 + 158760 0.66 0.999706
Target:  5'- aAGACAagAGGCCGCCGGcCGcGGCCa- -3'
miRNA:   3'- cUUUGUa-UUCGGCGGUCuGU-UUGGag -5'
30207 3' -48.4 NC_006273.1 + 210001 0.66 0.999706
Target:  5'- cAGACugcGGGUCGCCAGcCGggUCUCu -3'
miRNA:   3'- cUUUGua-UUCGGCGGUCuGUuuGGAG- -5'
30207 3' -48.4 NC_006273.1 + 12568 0.66 0.999706
Target:  5'- --uGCucu-GCgGCCAGGCcgaGAACCUCa -3'
miRNA:   3'- cuuUGuauuCGgCGGUCUG---UUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 134858 0.66 0.999706
Target:  5'- uGAGCcagGUGAGCCGCCAgGugAGGCgggaUCg -3'
miRNA:   3'- cUUUG---UAUUCGGCGGU-CugUUUGg---AG- -5'
30207 3' -48.4 NC_006273.1 + 42225 0.67 0.99963
Target:  5'- -cAGCGUGGGCUucggcggccgguGCCAGAgAAccauggGCCUCg -3'
miRNA:   3'- cuUUGUAUUCGG------------CGGUCUgUU------UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 121990 0.67 0.99963
Target:  5'- -cAACAgcaGGCCaGCCAGGCAggUCa- -3'
miRNA:   3'- cuUUGUau-UCGG-CGGUCUGUuuGGag -5'
30207 3' -48.4 NC_006273.1 + 213045 0.67 0.99963
Target:  5'- --cACAcGAGCC-CguGAUAGACCUCc -3'
miRNA:   3'- cuuUGUaUUCGGcGguCUGUUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 115492 0.67 0.999536
Target:  5'- aGGGCGcGGGCgGCCAGuAC-GGCCUCu -3'
miRNA:   3'- cUUUGUaUUCGgCGGUC-UGuUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 56573 0.67 0.999536
Target:  5'- --cGCGUucggguuGCUGCuuCAGAUAGACCUCa -3'
miRNA:   3'- cuuUGUAuu-----CGGCG--GUCUGUUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 133723 0.67 0.999536
Target:  5'- --uACAUcAGCgGCCAGAacguGACCUUc -3'
miRNA:   3'- cuuUGUAuUCGgCGGUCUgu--UUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 181462 0.67 0.999422
Target:  5'- -cGACGUGuacuGCUGCC-GcCAGACCUCc -3'
miRNA:   3'- cuUUGUAUu---CGGCGGuCuGUUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 183017 0.67 0.999422
Target:  5'- ---uCAUGAGCCuGCUGGACGAgGCCg- -3'
miRNA:   3'- cuuuGUAUUCGG-CGGUCUGUU-UGGag -5'
30207 3' -48.4 NC_006273.1 + 123440 0.67 0.999384
Target:  5'- cGAACGUGAGUucuggcagaugcagCGCCAGACAGucguguaacGCCg- -3'
miRNA:   3'- cUUUGUAUUCG--------------GCGGUCUGUU---------UGGag -5'
30207 3' -48.4 NC_006273.1 + 43321 0.67 0.999285
Target:  5'- --uACAUcaGGGCCaCCAGACAGACUcCg -3'
miRNA:   3'- cuuUGUA--UUCGGcGGUCUGUUUGGaG- -5'
30207 3' -48.4 NC_006273.1 + 45414 0.67 0.999285
Target:  5'- aGAAAgGUAGGgCGaaAGACAAACCg- -3'
miRNA:   3'- -CUUUgUAUUCgGCggUCUGUUUGGag -5'
30207 3' -48.4 NC_006273.1 + 196637 0.67 0.999285
Target:  5'- cGAcuCGUAGGCCGUCAGguGCGAgGCCg- -3'
miRNA:   3'- -CUuuGUAUUCGGCGGUC--UGUU-UGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.