miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30207 3' -48.4 NC_006273.1 + 45414 0.67 0.999285
Target:  5'- aGAAAgGUAGGgCGaaAGACAAACCg- -3'
miRNA:   3'- -CUUUgUAUUCgGCggUCUGUUUGGag -5'
30207 3' -48.4 NC_006273.1 + 174281 0.67 0.999121
Target:  5'- ---cCAUGAGCCGCUGGaggcaugggaGCAGGgCUCg -3'
miRNA:   3'- cuuuGUAUUCGGCGGUC----------UGUUUgGAG- -5'
30207 3' -48.4 NC_006273.1 + 129242 0.68 0.998926
Target:  5'- -uGGCGUGcGCCGCCGcGGcCAAGCCg- -3'
miRNA:   3'- cuUUGUAUuCGGCGGU-CU-GUUUGGag -5'
30207 3' -48.4 NC_006273.1 + 114800 0.68 0.998926
Target:  5'- cAAACGUc-GCCGCCAccGGCAAgacGCCUUg -3'
miRNA:   3'- cUUUGUAuuCGGCGGU--CUGUU---UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 141772 0.68 0.998926
Target:  5'- cGAAGCugcgcAGGCCGCCGcuCAAGCCg- -3'
miRNA:   3'- -CUUUGua---UUCGGCGGUcuGUUUGGag -5'
30207 3' -48.4 NC_006273.1 + 30085 0.68 0.998926
Target:  5'- --cACGUAAGCUuCCAGACAGcCCa- -3'
miRNA:   3'- cuuUGUAUUCGGcGGUCUGUUuGGag -5'
30207 3' -48.4 NC_006273.1 + 63826 0.68 0.998695
Target:  5'- -cGGCAgcGGCaCGCCGcGAguGACCUCu -3'
miRNA:   3'- cuUUGUauUCG-GCGGU-CUguUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 80535 0.68 0.998695
Target:  5'- uAGGCGUAGGCCGCCugcucgcaGGGCGuGCgUUCg -3'
miRNA:   3'- cUUUGUAUUCGGCGG--------UCUGUuUG-GAG- -5'
30207 3' -48.4 NC_006273.1 + 169907 0.68 0.998423
Target:  5'- --cACA-GGGCCGCCGuGACGAugCUg -3'
miRNA:   3'- cuuUGUaUUCGGCGGU-CUGUUugGAg -5'
30207 3' -48.4 NC_006273.1 + 190139 0.68 0.998423
Target:  5'- cGAGC---AGCCGCCGGGCGGcacgggcaaguGCUUCa -3'
miRNA:   3'- cUUUGuauUCGGCGGUCUGUU-----------UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 179227 0.68 0.998423
Target:  5'- -uGACGUAcGCCGCgGGGCuuuaGAAUCUCc -3'
miRNA:   3'- cuUUGUAUuCGGCGgUCUG----UUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 99580 0.68 0.998423
Target:  5'- gGGAugAUGGGCUGCUuguGGgGAACCUg -3'
miRNA:   3'- -CUUugUAUUCGGCGGu--CUgUUUGGAg -5'
30207 3' -48.4 NC_006273.1 + 34718 0.68 0.998104
Target:  5'- ---cCGgcGGCCGCCAGAU---CCUCg -3'
miRNA:   3'- cuuuGUauUCGGCGGUCUGuuuGGAG- -5'
30207 3' -48.4 NC_006273.1 + 192116 0.68 0.998104
Target:  5'- gGGAGCGgcAGCgGCUAGACAAGuCC-Ca -3'
miRNA:   3'- -CUUUGUauUCGgCGGUCUGUUU-GGaG- -5'
30207 3' -48.4 NC_006273.1 + 7050 0.69 0.997733
Target:  5'- aGAGCGUccGCCGCCAGAagcacgauGCCg- -3'
miRNA:   3'- cUUUGUAuuCGGCGGUCUguu-----UGGag -5'
30207 3' -48.4 NC_006273.1 + 219262 0.69 0.997733
Target:  5'- -cGGCAUGGuGCUGCCGGGCcgcACCUg -3'
miRNA:   3'- cuUUGUAUU-CGGCGGUCUGuu-UGGAg -5'
30207 3' -48.4 NC_006273.1 + 140873 0.69 0.997303
Target:  5'- cGggGCGcGAGgugcCCGCCuGGCcGGCCUCg -3'
miRNA:   3'- -CuuUGUaUUC----GGCGGuCUGuUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 90176 0.69 0.997303
Target:  5'- -uGACAaAAGCCGgCAGugAAaagcgcgcuACCUCg -3'
miRNA:   3'- cuUUGUaUUCGGCgGUCugUU---------UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 223121 0.69 0.997303
Target:  5'- -uAGCAgGAGCa-CCAGACGGGCCUg -3'
miRNA:   3'- cuUUGUaUUCGgcGGUCUGUUUGGAg -5'
30207 3' -48.4 NC_006273.1 + 193064 0.69 0.997257
Target:  5'- aGAAACAUGuccccacgcAGCCGCUGGACGGcuggagcuggaucGCCa- -3'
miRNA:   3'- -CUUUGUAU---------UCGGCGGUCUGUU-------------UGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.