miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30207 3' -48.4 NC_006273.1 + 1079 0.72 0.975848
Target:  5'- --cGCG--GGCCGCCGGGCGccCCUCc -3'
miRNA:   3'- cuuUGUauUCGGCGGUCUGUuuGGAG- -5'
30207 3' -48.4 NC_006273.1 + 1791 0.66 0.999892
Target:  5'- cGGAAcCAUGGGCCGCCAaccuGuCGucACCUUa -3'
miRNA:   3'- -CUUU-GUAUUCGGCGGU----CuGUu-UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 2016 0.71 0.982769
Target:  5'- gGAGACGgAGGCCGCCggcggGGACGcGCCg- -3'
miRNA:   3'- -CUUUGUaUUCGGCGG-----UCUGUuUGGag -5'
30207 3' -48.4 NC_006273.1 + 3455 0.66 0.99986
Target:  5'- aGGAGCGUGuccGCCGCCGGGaagguGGUCUCu -3'
miRNA:   3'- -CUUUGUAUu--CGGCGGUCUgu---UUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 4521 0.66 0.999815
Target:  5'- aGAAGCcgAccGGCCGCCgacccguuccccaGGACcAGCCUa -3'
miRNA:   3'- -CUUUGuaU--UCGGCGG-------------UCUGuUUGGAg -5'
30207 3' -48.4 NC_006273.1 + 4645 0.73 0.956281
Target:  5'- --uACcgGAGCCcCCAGACAGGCCg- -3'
miRNA:   3'- cuuUGuaUUCGGcGGUCUGUUUGGag -5'
30207 3' -48.4 NC_006273.1 + 5148 0.66 0.999819
Target:  5'- ---uCAUGAGuuGCCucauGAUAAACCg- -3'
miRNA:   3'- cuuuGUAUUCggCGGu---CUGUUUGGag -5'
30207 3' -48.4 NC_006273.1 + 7050 0.69 0.997733
Target:  5'- aGAGCGUccGCCGCCAGAagcacgauGCCg- -3'
miRNA:   3'- cUUUGUAuuCGGCGGUCUguu-----UGGag -5'
30207 3' -48.4 NC_006273.1 + 12568 0.66 0.999706
Target:  5'- --uGCucu-GCgGCCAGGCcgaGAACCUCa -3'
miRNA:   3'- cuuUGuauuCGgCGGUCUG---UUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 22118 0.75 0.916523
Target:  5'- gGAAACu---GCCGCgGGAgAAGCCUCu -3'
miRNA:   3'- -CUUUGuauuCGGCGgUCUgUUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 30085 0.68 0.998926
Target:  5'- --cACGUAAGCUuCCAGACAGcCCa- -3'
miRNA:   3'- cuuUGUAUUCGGcGGUCUGUUuGGag -5'
30207 3' -48.4 NC_006273.1 + 30120 0.66 0.999819
Target:  5'- ---cCGUGAG-CGCCAGGCuAGCCa- -3'
miRNA:   3'- cuuuGUAUUCgGCGGUCUGuUUGGag -5'
30207 3' -48.4 NC_006273.1 + 31450 0.66 0.999763
Target:  5'- -uGGCG-AAGCCGCCaugAGGCGGuggcugcGCCUCc -3'
miRNA:   3'- cuUUGUaUUCGGCGG---UCUGUU-------UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 34667 0.66 0.999892
Target:  5'- cGGAGCGgugagcgGAGCCGagCAG-CGGACCUUc -3'
miRNA:   3'- -CUUUGUa------UUCGGCg-GUCuGUUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 34718 0.68 0.998104
Target:  5'- ---cCGgcGGCCGCCAGAU---CCUCg -3'
miRNA:   3'- cuuuGUauUCGGCGGUCUGuuuGGAG- -5'
30207 3' -48.4 NC_006273.1 + 35458 0.76 0.883364
Target:  5'- cAAGCGggcGAGCCGcCCAGGCGGAUCUUg -3'
miRNA:   3'- cUUUGUa--UUCGGC-GGUCUGUUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 38075 0.72 0.978349
Target:  5'- cGGGCAgcAGCCGCCGcGC-GGCCUCg -3'
miRNA:   3'- cUUUGUauUCGGCGGUcUGuUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 39624 0.73 0.952199
Target:  5'- uGGGCcauGGCCGCCGGAC--ACCUCc -3'
miRNA:   3'- cUUUGuauUCGGCGGUCUGuuUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 40494 0.69 0.99559
Target:  5'- cGAGGCGgcccggcuGCUGCCGGACAGGCg-- -3'
miRNA:   3'- -CUUUGUauu-----CGGCGGUCUGUUUGgag -5'
30207 3' -48.4 NC_006273.1 + 42225 0.67 0.99963
Target:  5'- -cAGCGUGGGCUucggcggccgguGCCAGAgAAccauggGCCUCg -3'
miRNA:   3'- cuUUGUAUUCGG------------CGGUCUgUU------UGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.