miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30207 3' -48.4 NC_006273.1 + 42668 0.66 0.999819
Target:  5'- --cGCAgcAGCaGCCAGAgGAACCa- -3'
miRNA:   3'- cuuUGUauUCGgCGGUCUgUUUGGag -5'
30207 3' -48.4 NC_006273.1 + 43321 0.67 0.999285
Target:  5'- --uACAUcaGGGCCaCCAGACAGACUcCg -3'
miRNA:   3'- cuuUGUA--UUCGGcGGUCUGUUUGGaG- -5'
30207 3' -48.4 NC_006273.1 + 45414 0.67 0.999285
Target:  5'- aGAAAgGUAGGgCGaaAGACAAACCg- -3'
miRNA:   3'- -CUUUgUAUUCgGCggUCUGUUUGGag -5'
30207 3' -48.4 NC_006273.1 + 50672 0.73 0.952199
Target:  5'- gGAGACGcucAGCCgGCCcGACGAACCUUg -3'
miRNA:   3'- -CUUUGUau-UCGG-CGGuCUGUUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 52088 0.69 0.99559
Target:  5'- uGAcGCGUGGGCCGCaCcGAagcuuccuccCAGGCCUCg -3'
miRNA:   3'- -CUuUGUAUUCGGCG-GuCU----------GUUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 56573 0.67 0.999536
Target:  5'- --cGCGUucggguuGCUGCuuCAGAUAGACCUCa -3'
miRNA:   3'- cuuUGUAuu-----CGGCG--GUCUGUUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 59068 0.71 0.986472
Target:  5'- ------aGAGCCGCCgggAGACAGGCCg- -3'
miRNA:   3'- cuuuguaUUCGGCGG---UCUGUUUGGag -5'
30207 3' -48.4 NC_006273.1 + 63826 0.68 0.998695
Target:  5'- -cGGCAgcGGCaCGCCGcGAguGACCUCu -3'
miRNA:   3'- cuUUGUauUCG-GCGGU-CUguUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 72397 0.69 0.996808
Target:  5'- --cGCAgcuGCCGCCGu-CGAGCCUCc -3'
miRNA:   3'- cuuUGUauuCGGCGGUcuGUUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 73413 0.66 0.999836
Target:  5'- uGGACAUGaAGCCcugcugcgucuuggcGCCAGcCgAAGCCUCg -3'
miRNA:   3'- cUUUGUAU-UCGG---------------CGGUCuG-UUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 75257 0.8 0.720951
Target:  5'- cGAAGCGcuGGCCGCCGcGGCGGccGCCUCa -3'
miRNA:   3'- -CUUUGUauUCGGCGGU-CUGUU--UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 79927 0.69 0.996808
Target:  5'- uGAAACAU-AGCCGCCAca-GAACC-Cg -3'
miRNA:   3'- -CUUUGUAuUCGGCGGUcugUUUGGaG- -5'
30207 3' -48.4 NC_006273.1 + 80535 0.68 0.998695
Target:  5'- uAGGCGUAGGCCGCCugcucgcaGGGCGuGCgUUCg -3'
miRNA:   3'- cUUUGUAUUCGGCGG--------UCUGUuUG-GAG- -5'
30207 3' -48.4 NC_006273.1 + 80833 0.7 0.994017
Target:  5'- -cGACGU-GGCCGCgGGGCGcagcGCCUCc -3'
miRNA:   3'- cuUUGUAuUCGGCGgUCUGUu---UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 84821 0.66 0.999892
Target:  5'- cGAGCGUAAGCCG-UGGACGguuggcccgugGGCCUg -3'
miRNA:   3'- cUUUGUAUUCGGCgGUCUGU-----------UUGGAg -5'
30207 3' -48.4 NC_006273.1 + 87372 0.69 0.996808
Target:  5'- cGAAGCuguuGCCGCCGcuugcGGCGcAACCUCc -3'
miRNA:   3'- -CUUUGuauuCGGCGGU-----CUGU-UUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 90176 0.69 0.997303
Target:  5'- -uGACAaAAGCCGgCAGugAAaagcgcgcuACCUCg -3'
miRNA:   3'- cuUUGUaUUCGGCgGUCugUU---------UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 90618 0.66 0.999769
Target:  5'- cGAGGCcacGGCCGCCGcGuCGuGCCUCc -3'
miRNA:   3'- -CUUUGuauUCGGCGGU-CuGUuUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 90991 0.71 0.989532
Target:  5'- cGGGCAgacAGCCGCU-GACGAagGCCUCg -3'
miRNA:   3'- cUUUGUau-UCGGCGGuCUGUU--UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 93503 0.66 0.999892
Target:  5'- aAGugGUGAcGCCGCC--GCcGGCCUCg -3'
miRNA:   3'- cUUugUAUU-CGGCGGucUGuUUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.