miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30207 3' -48.4 NC_006273.1 + 94380 0.7 0.993077
Target:  5'- cGggGcCGUGGGCCGggcaCCGGGCGcggcccgcuccgGACCUCg -3'
miRNA:   3'- -CuuU-GUAUUCGGC----GGUCUGU------------UUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 94504 0.75 0.916523
Target:  5'- -cGACG-AGGCCgGCCAGGCGGgcACCUCg -3'
miRNA:   3'- cuUUGUaUUCGG-CGGUCUGUU--UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 95307 0.74 0.933355
Target:  5'- -cGACgGUGGGCCGCCAuGAC--ACCUCa -3'
miRNA:   3'- cuUUG-UAUUCGGCGGU-CUGuuUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 96604 0.71 0.986472
Target:  5'- aGGAC---AGCCGCCGGAgAAGCCg- -3'
miRNA:   3'- cUUUGuauUCGGCGGUCUgUUUGGag -5'
30207 3' -48.4 NC_006273.1 + 97905 0.71 0.984706
Target:  5'- aGAGACGgcaAAGCCGCCcGGCAGcACC-Ca -3'
miRNA:   3'- -CUUUGUa--UUCGGCGGuCUGUU-UGGaG- -5'
30207 3' -48.4 NC_006273.1 + 99580 0.68 0.998423
Target:  5'- gGGAugAUGGGCUGCUuguGGgGAACCUg -3'
miRNA:   3'- -CUUugUAUUCGGCGGu--CUgUUUGGAg -5'
30207 3' -48.4 NC_006273.1 + 100833 0.66 0.999706
Target:  5'- -cGGgGUAGGgUGCCAGACGuaGACuCUCg -3'
miRNA:   3'- cuUUgUAUUCgGCGGUCUGU--UUG-GAG- -5'
30207 3' -48.4 NC_006273.1 + 102080 0.66 0.999819
Target:  5'- cGAGCAgcGGCgGCCAcacgcgggugacGACGAGCCg- -3'
miRNA:   3'- cUUUGUauUCGgCGGU------------CUGUUUGGag -5'
30207 3' -48.4 NC_006273.1 + 105399 0.75 0.922392
Target:  5'- -cAACAgcAGCCGCCGGuCGAGCC-Cg -3'
miRNA:   3'- cuUUGUauUCGGCGGUCuGUUUGGaG- -5'
30207 3' -48.4 NC_006273.1 + 108642 0.7 0.994852
Target:  5'- -cAGCGUcaGGGCCuGCCGGACuuuAUCUCa -3'
miRNA:   3'- cuUUGUA--UUCGG-CGGUCUGuu-UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 114800 0.68 0.998926
Target:  5'- cAAACGUc-GCCGCCAccGGCAAgacGCCUUg -3'
miRNA:   3'- cUUUGUAuuCGGCGGU--CUGUU---UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 115123 0.75 0.910396
Target:  5'- cGAGGCcgAAGCCGCCAGcGgAAGCUUUg -3'
miRNA:   3'- -CUUUGuaUUCGGCGGUC-UgUUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 115492 0.67 0.999536
Target:  5'- aGGGCGcGGGCgGCCAGuAC-GGCCUCu -3'
miRNA:   3'- cUUUGUaUUCGgCGGUC-UGuUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 115806 0.7 0.994017
Target:  5'- --cGCGUGaagaaGGCCGCCAGACGAAa--- -3'
miRNA:   3'- cuuUGUAU-----UCGGCGGUCUGUUUggag -5'
30207 3' -48.4 NC_006273.1 + 121990 0.67 0.99963
Target:  5'- -cAACAgcaGGCCaGCCAGGCAggUCa- -3'
miRNA:   3'- cuUUGUau-UCGG-CGGUCUGUuuGGag -5'
30207 3' -48.4 NC_006273.1 + 123440 0.67 0.999384
Target:  5'- cGAACGUGAGUucuggcagaugcagCGCCAGACAGucguguaacGCCg- -3'
miRNA:   3'- cUUUGUAUUCG--------------GCGGUCUGUU---------UGGag -5'
30207 3' -48.4 NC_006273.1 + 129242 0.68 0.998926
Target:  5'- -uGGCGUGcGCCGCCGcGGcCAAGCCg- -3'
miRNA:   3'- cuUUGUAUuCGGCGGU-CU-GUUUGGag -5'
30207 3' -48.4 NC_006273.1 + 130069 0.74 0.947868
Target:  5'- ---cCAgcAGCCGCUGGuCGAACCUCa -3'
miRNA:   3'- cuuuGUauUCGGCGGUCuGUUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 133723 0.67 0.999536
Target:  5'- --uACAUcAGCgGCCAGAacguGACCUUc -3'
miRNA:   3'- cuuUGUAuUCGgCGGUCUgu--UUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 133921 0.7 0.992022
Target:  5'- cGGAACGgagcAGCCGCCAG-CGAauaccAUCUCg -3'
miRNA:   3'- -CUUUGUau--UCGGCGGUCuGUU-----UGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.