miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30207 3' -48.4 NC_006273.1 + 232968 0.72 0.978349
Target:  5'- cGGGCAgcAGCCGCCGcGC-GGCCUCg -3'
miRNA:   3'- cUUUGUauUCGGCGGUcUGuUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 230417 0.66 0.999805
Target:  5'- uGAAACAUAAagccaaagcGCCGUCGGcacuuggcuucagaGCAGcGCCUCg -3'
miRNA:   3'- -CUUUGUAUU---------CGGCGGUC--------------UGUU-UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 228754 0.72 0.973143
Target:  5'- uGAGACG-AGGCCGCCGcccGACAaguucGAUCUCa -3'
miRNA:   3'- -CUUUGUaUUCGGCGGU---CUGU-----UUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 223121 0.69 0.997303
Target:  5'- -uAGCAgGAGCa-CCAGACGGGCCUg -3'
miRNA:   3'- cuUUGUaUUCGgcGGUCUGUUUGGAg -5'
30207 3' -48.4 NC_006273.1 + 219262 0.69 0.997733
Target:  5'- -cGGCAUGGuGCUGCCGGGCcgcACCUg -3'
miRNA:   3'- cuUUGUAUU-CGGCGGUCUGuu-UGGAg -5'
30207 3' -48.4 NC_006273.1 + 214965 0.69 0.996808
Target:  5'- cGGAAC---AGCUGCCAG-CGGACCgUCa -3'
miRNA:   3'- -CUUUGuauUCGGCGGUCuGUUUGG-AG- -5'
30207 3' -48.4 NC_006273.1 + 213045 0.67 0.99963
Target:  5'- --cACAcGAGCC-CguGAUAGACCUCc -3'
miRNA:   3'- cuuUGUaUUCGGcGguCUGUUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 211218 0.7 0.990843
Target:  5'- -uGGgGUAGGCCGCCgAGACGuuAGCCa- -3'
miRNA:   3'- cuUUgUAUUCGGCGG-UCUGU--UUGGag -5'
30207 3' -48.4 NC_006273.1 + 210927 0.69 0.99559
Target:  5'- aGGAGCA--AGCCGgcgauUCGGACGAcaACCUCg -3'
miRNA:   3'- -CUUUGUauUCGGC-----GGUCUGUU--UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 210001 0.66 0.999706
Target:  5'- cAGACugcGGGUCGCCAGcCGggUCUCu -3'
miRNA:   3'- cUUUGua-UUCGGCGGUCuGUuuGGAG- -5'
30207 3' -48.4 NC_006273.1 + 205352 0.71 0.986472
Target:  5'- ---cCGUGgucuGGCCGCCGGGCugGAACCUa -3'
miRNA:   3'- cuuuGUAU----UCGGCGGUCUG--UUUGGAg -5'
30207 3' -48.4 NC_006273.1 + 198002 1.1 0.018501
Target:  5'- aGAAACAUAAGCCGCCAGACAAACCUCc -3'
miRNA:   3'- -CUUUGUAUUCGGCGGUCUGUUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 196909 0.71 0.982769
Target:  5'- gGAGACGgAGGCCGCCggcggGGACGcGCCg- -3'
miRNA:   3'- -CUUUGUaUUCGGCGG-----UCUGUuUGGag -5'
30207 3' -48.4 NC_006273.1 + 196637 0.67 0.999285
Target:  5'- cGAcuCGUAGGCCGUCAGguGCGAgGCCg- -3'
miRNA:   3'- -CUuuGUAUUCGGCGGUC--UGUU-UGGag -5'
30207 3' -48.4 NC_006273.1 + 195972 0.72 0.975848
Target:  5'- --cGCG--GGCCGCCGGGCGccCCUCc -3'
miRNA:   3'- cuuUGUauUCGGCGGUCUGUuuGGAG- -5'
30207 3' -48.4 NC_006273.1 + 193064 0.69 0.997257
Target:  5'- aGAAACAUGuccccacgcAGCCGCUGGACGGcuggagcuggaucGCCa- -3'
miRNA:   3'- -CUUUGUAU---------UCGGCGGUCUGUU-------------UGGag -5'
30207 3' -48.4 NC_006273.1 + 192116 0.68 0.998104
Target:  5'- gGGAGCGgcAGCgGCUAGACAAGuCC-Ca -3'
miRNA:   3'- -CUUUGUauUCGgCGGUCUGUUU-GGaG- -5'
30207 3' -48.4 NC_006273.1 + 190139 0.68 0.998423
Target:  5'- cGAGC---AGCCGCCGGGCGGcacgggcaaguGCUUCa -3'
miRNA:   3'- cUUUGuauUCGGCGGUCUGUU-----------UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 183017 0.67 0.999422
Target:  5'- ---uCAUGAGCCuGCUGGACGAgGCCg- -3'
miRNA:   3'- cuuuGUAUUCGG-CGGUCUGUU-UGGag -5'
30207 3' -48.4 NC_006273.1 + 181462 0.67 0.999422
Target:  5'- -cGACGUGuacuGCUGCC-GcCAGACCUCc -3'
miRNA:   3'- cuUUGUAUu---CGGCGGuCuGUUUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.