miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30207 3' -48.4 NC_006273.1 + 148333 0.69 0.996239
Target:  5'- -cGACG-AGGCCGuCCuGGCAcGCCUCu -3'
miRNA:   3'- cuUUGUaUUCGGC-GGuCUGUuUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 196909 0.71 0.982769
Target:  5'- gGAGACGgAGGCCGCCggcggGGACGcGCCg- -3'
miRNA:   3'- -CUUUGUaUUCGGCGG-----UCUGUuUGGag -5'
30207 3' -48.4 NC_006273.1 + 59068 0.71 0.986472
Target:  5'- ------aGAGCCGCCgggAGACAGGCCg- -3'
miRNA:   3'- cuuuguaUUCGGCGG---UCUGUUUGGag -5'
30207 3' -48.4 NC_006273.1 + 96604 0.71 0.986472
Target:  5'- aGGAC---AGCCGCCGGAgAAGCCg- -3'
miRNA:   3'- cUUUGuauUCGGCGGUCUgUUUGGag -5'
30207 3' -48.4 NC_006273.1 + 94380 0.7 0.993077
Target:  5'- cGggGcCGUGGGCCGggcaCCGGGCGcggcccgcuccgGACCUCg -3'
miRNA:   3'- -CuuU-GUAUUCGGC----GGUCUGU------------UUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 115806 0.7 0.994017
Target:  5'- --cGCGUGaagaaGGCCGCCAGACGAAa--- -3'
miRNA:   3'- cuuUGUAU-----UCGGCGGUCUGUUUggag -5'
30207 3' -48.4 NC_006273.1 + 210927 0.69 0.99559
Target:  5'- aGGAGCA--AGCCGgcgauUCGGACGAcaACCUCg -3'
miRNA:   3'- -CUUUGUauUCGGC-----GGUCUGUU--UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 52088 0.69 0.99559
Target:  5'- uGAcGCGUGGGCCGCaCcGAagcuuccuccCAGGCCUCg -3'
miRNA:   3'- -CUuUGUAUUCGGCG-GuCU----------GUUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 40494 0.69 0.99559
Target:  5'- cGAGGCGgcccggcuGCUGCCGGACAGGCg-- -3'
miRNA:   3'- -CUUUGUauu-----CGGCGGUCUGUUUGgag -5'
30207 3' -48.4 NC_006273.1 + 163850 0.72 0.980654
Target:  5'- -cGGCAgcGGCCGCCGG-CGAGggcCCUCg -3'
miRNA:   3'- cuUUGUauUCGGCGGUCuGUUU---GGAG- -5'
30207 3' -48.4 NC_006273.1 + 232968 0.72 0.978349
Target:  5'- cGGGCAgcAGCCGCCGcGC-GGCCUCg -3'
miRNA:   3'- cUUUGUauUCGGCGGUcUGuUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 195972 0.72 0.975848
Target:  5'- --cGCG--GGCCGCCGGGCGccCCUCc -3'
miRNA:   3'- cuuUGUauUCGGCGGUCUGUuuGGAG- -5'
30207 3' -48.4 NC_006273.1 + 75257 0.8 0.720951
Target:  5'- cGAAGCGcuGGCCGCCGcGGCGGccGCCUCa -3'
miRNA:   3'- -CUUUGUauUCGGCGGU-CUGUU--UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 35458 0.76 0.883364
Target:  5'- cAAGCGggcGAGCCGcCCAGGCGGAUCUUg -3'
miRNA:   3'- cUUUGUa--UUCGGC-GGUCUGUUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 22118 0.75 0.916523
Target:  5'- gGAAACu---GCCGCgGGAgAAGCCUCu -3'
miRNA:   3'- -CUUUGuauuCGGCGgUCUgUUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 105399 0.75 0.922392
Target:  5'- -cAACAgcAGCCGCCGGuCGAGCC-Cg -3'
miRNA:   3'- cuUUGUauUCGGCGGUCuGUUUGGaG- -5'
30207 3' -48.4 NC_006273.1 + 95307 0.74 0.933355
Target:  5'- -cGACgGUGGGCCGCCAuGAC--ACCUCa -3'
miRNA:   3'- cuUUG-UAUUCGGCGGU-CUGuuUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 142724 0.73 0.960119
Target:  5'- --cGCGUAAGCacaGCgAGACGGugCUCa -3'
miRNA:   3'- cuuUGUAUUCGg--CGgUCUGUUugGAG- -5'
30207 3' -48.4 NC_006273.1 + 167387 0.73 0.963719
Target:  5'- ---cCAUGAcGCCGCCGGGCAGAgCgUCg -3'
miRNA:   3'- cuuuGUAUU-CGGCGGUCUGUUU-GgAG- -5'
30207 3' -48.4 NC_006273.1 + 228754 0.72 0.973143
Target:  5'- uGAGACG-AGGCCGCCGcccGACAaguucGAUCUCa -3'
miRNA:   3'- -CUUUGUaUUCGGCGGU---CUGU-----UUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.