miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30207 3' -48.4 NC_006273.1 + 115123 0.75 0.910396
Target:  5'- cGAGGCcgAAGCCGCCAGcGgAAGCUUUg -3'
miRNA:   3'- -CUUUGuaUUCGGCGGUC-UgUUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 169627 0.69 0.996239
Target:  5'- uGGAugAUGAGCUGCUggAGACGAucggugaggaaGCUUCg -3'
miRNA:   3'- -CUUugUAUUCGGCGG--UCUGUU-----------UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 193064 0.69 0.997257
Target:  5'- aGAAACAUGuccccacgcAGCCGCUGGACGGcuggagcuggaucGCCa- -3'
miRNA:   3'- -CUUUGUAU---------UCGGCGGUCUGUU-------------UGGag -5'
30207 3' -48.4 NC_006273.1 + 161118 0.66 0.999892
Target:  5'- ------aGAGCCGCaCAGACcacguGCCUUg -3'
miRNA:   3'- cuuuguaUUCGGCG-GUCUGuu---UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 50672 0.73 0.952199
Target:  5'- gGAGACGcucAGCCgGCCcGACGAACCUUg -3'
miRNA:   3'- -CUUUGUau-UCGG-CGGuCUGUUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 4645 0.73 0.956281
Target:  5'- --uACcgGAGCCcCCAGACAGGCCg- -3'
miRNA:   3'- cuuUGuaUUCGGcGGUCUGUUUGGag -5'
30207 3' -48.4 NC_006273.1 + 38075 0.72 0.978349
Target:  5'- cGGGCAgcAGCCGCCGcGC-GGCCUCg -3'
miRNA:   3'- cUUUGUauUCGGCGGUcUGuUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 2016 0.71 0.982769
Target:  5'- gGAGACGgAGGCCGCCggcggGGACGcGCCg- -3'
miRNA:   3'- -CUUUGUaUUCGGCGG-----UCUGUuUGGag -5'
30207 3' -48.4 NC_006273.1 + 177146 0.71 0.988078
Target:  5'- uGggGCGUGAcGCCGUCAGuguGGGCUUCg -3'
miRNA:   3'- -CuuUGUAUU-CGGCGGUCug-UUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 108642 0.7 0.994852
Target:  5'- -cAGCGUcaGGGCCuGCCGGACuuuAUCUCa -3'
miRNA:   3'- cuUUGUA--UUCGG-CGGUCUGuu-UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 211218 0.7 0.990843
Target:  5'- -uGGgGUAGGCCGCCgAGACGuuAGCCa- -3'
miRNA:   3'- cuUUgUAUUCGGCGG-UCUGU--UUGGag -5'
30207 3' -48.4 NC_006273.1 + 205352 0.71 0.986472
Target:  5'- ---cCGUGgucuGGCCGCCGGGCugGAACCUa -3'
miRNA:   3'- cuuuGUAU----UCGGCGGUCUG--UUUGGAg -5'
30207 3' -48.4 NC_006273.1 + 94504 0.75 0.916523
Target:  5'- -cGACG-AGGCCgGCCAGGCGGgcACCUCg -3'
miRNA:   3'- cuUUGUaUUCGG-CGGUCUGUU--UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 133921 0.7 0.992022
Target:  5'- cGGAACGgagcAGCCGCCAG-CGAauaccAUCUCg -3'
miRNA:   3'- -CUUUGUau--UCGGCGGUCuGUU-----UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 130069 0.74 0.947868
Target:  5'- ---cCAgcAGCCGCUGGuCGAACCUCa -3'
miRNA:   3'- cuuuGUauUCGGCGGUCuGUUUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 97905 0.71 0.984706
Target:  5'- aGAGACGgcaAAGCCGCCcGGCAGcACC-Ca -3'
miRNA:   3'- -CUUUGUa--UUCGGCGGuCUGUU-UGGaG- -5'
30207 3' -48.4 NC_006273.1 + 80833 0.7 0.994017
Target:  5'- -cGACGU-GGCCGCgGGGCGcagcGCCUCc -3'
miRNA:   3'- cuUUGUAuUCGGCGgUCUGUu---UGGAG- -5'
30207 3' -48.4 NC_006273.1 + 214965 0.69 0.996808
Target:  5'- cGGAAC---AGCUGCCAG-CGGACCgUCa -3'
miRNA:   3'- -CUUUGuauUCGGCGGUCuGUUUGG-AG- -5'
30207 3' -48.4 NC_006273.1 + 39624 0.73 0.952199
Target:  5'- uGGGCcauGGCCGCCGGAC--ACCUCc -3'
miRNA:   3'- cUUUGuauUCGGCGGUCUGuuUGGAG- -5'
30207 3' -48.4 NC_006273.1 + 1079 0.72 0.975848
Target:  5'- --cGCG--GGCCGCCGGGCGccCCUCc -3'
miRNA:   3'- cuuUGUauUCGGCGGUCUGUuuGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.