miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30207 5' -60.9 NC_006273.1 + 233283 0.66 0.838153
Target:  5'- cGCAAAuCGcGCUCCcGCCggCGCCUCCGu -3'
miRNA:   3'- -CGUUUuGCcCGGGGcCGG--GUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 187132 0.66 0.838153
Target:  5'- uGCAGAuac-GCUUgGGCUCGCCUCCGu -3'
miRNA:   3'- -CGUUUugccCGGGgCCGGGUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 216881 0.66 0.838153
Target:  5'- cGCAGgcccucGAUGGaGCCCagcaugagcaaCGGCuCCACCUCgGu -3'
miRNA:   3'- -CGUU------UUGCC-CGGG-----------GCCG-GGUGGAGgC- -5'
30207 5' -60.9 NC_006273.1 + 234783 0.66 0.838153
Target:  5'- cGCGGAcUGGGuCCCCGaGCgCGcacCCUCCu -3'
miRNA:   3'- -CGUUUuGCCC-GGGGC-CGgGU---GGAGGc -5'
30207 5' -60.9 NC_006273.1 + 142735 0.66 0.838153
Target:  5'- aGCGAGACGGuGCUCaCGGUCUggaugucggGCCugaUCCGc -3'
miRNA:   3'- -CGUUUUGCC-CGGG-GCCGGG---------UGG---AGGC- -5'
30207 5' -60.9 NC_006273.1 + 38390 0.66 0.838153
Target:  5'- cGCAAAuCGcGCUCCcGCCggCGCCUCCGu -3'
miRNA:   3'- -CGUUUuGCcCGGGGcCGG--GUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 131887 0.66 0.838153
Target:  5'- cGCAccuGGCGGGCUucuUCGGC--ACCUCCa -3'
miRNA:   3'- -CGUu--UUGCCCGG---GGCCGggUGGAGGc -5'
30207 5' -60.9 NC_006273.1 + 70835 0.66 0.838153
Target:  5'- gGCAcgcuGGCGGGCCgaccgCCGcGCCCucCCUCa- -3'
miRNA:   3'- -CGUu---UUGCCCGG-----GGC-CGGGu-GGAGgc -5'
30207 5' -60.9 NC_006273.1 + 172267 0.66 0.835845
Target:  5'- uGCuguGCaGGUCCCGauacagguacucgcGCuCCGCCUCCGu -3'
miRNA:   3'- -CGuuuUGcCCGGGGC--------------CG-GGUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 88892 0.66 0.830405
Target:  5'- uCAAGuacCaGGCgCUGGCCacaGCCUCCGg -3'
miRNA:   3'- cGUUUu--GcCCGgGGCCGGg--UGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 78673 0.66 0.830405
Target:  5'- cGCGAGAagGGGCCgggguccgCgGGCaCCGCCgCCGg -3'
miRNA:   3'- -CGUUUUg-CCCGG--------GgCCG-GGUGGaGGC- -5'
30207 5' -60.9 NC_006273.1 + 134171 0.66 0.830405
Target:  5'- aGCGAcGCGuGGCCgC-GUCCGCCUCgGu -3'
miRNA:   3'- -CGUUuUGC-CCGGgGcCGGGUGGAGgC- -5'
30207 5' -60.9 NC_006273.1 + 192989 0.66 0.830405
Target:  5'- aGCGAcGCGacuuuggggauGGCCUCGuGCUCACCgCCGc -3'
miRNA:   3'- -CGUUuUGC-----------CCGGGGC-CGGGUGGaGGC- -5'
30207 5' -60.9 NC_006273.1 + 102125 0.66 0.822498
Target:  5'- gGCAuccuCGGGCUuuCCGGCCaacaugcccagCAUCUCCu -3'
miRNA:   3'- -CGUuuu-GCCCGG--GGCCGG-----------GUGGAGGc -5'
30207 5' -60.9 NC_006273.1 + 38257 0.66 0.822498
Target:  5'- cGCGGcACGGuccccgacGCCgCCGGaCCCGCCaucgCCGu -3'
miRNA:   3'- -CGUUuUGCC--------CGG-GGCC-GGGUGGa---GGC- -5'
30207 5' -60.9 NC_006273.1 + 92223 0.66 0.822498
Target:  5'- aGCAGuuggggauGCGGcGCgCCGuGCCCGUCUCCu -3'
miRNA:   3'- -CGUUu-------UGCC-CGgGGC-CGGGUGGAGGc -5'
30207 5' -60.9 NC_006273.1 + 121647 0.66 0.822498
Target:  5'- aGCAcgGCGccGCCgCCGuCgCCACCUCCGg -3'
miRNA:   3'- -CGUuuUGCc-CGG-GGCcG-GGUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 233150 0.66 0.822498
Target:  5'- cGCGGcACGGuccccgacGCCgCCGGaCCCGCCaucgCCGu -3'
miRNA:   3'- -CGUUuUGCC--------CGG-GGCC-GGGUGGa---GGC- -5'
30207 5' -60.9 NC_006273.1 + 172200 0.66 0.822498
Target:  5'- gGCAAAgGCGaGGCCgcgCCGGCCgCGCCg-CGa -3'
miRNA:   3'- -CGUUU-UGC-CCGG---GGCCGG-GUGGagGC- -5'
30207 5' -60.9 NC_006273.1 + 81755 0.66 0.821699
Target:  5'- cGCGGAGcCGGGCUgcgaacgcugacgCCGGCCacccgcgaccgCACCgCCGg -3'
miRNA:   3'- -CGUUUU-GCCCGG-------------GGCCGG-----------GUGGaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.