miRNA display CGI


Results 1 - 20 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30207 5' -60.9 NC_006273.1 + 73574 0.66 0.797899
Target:  5'- cGC---GCGGacccuccgauGUCCUGGCCCGCCgcugCCGc -3'
miRNA:   3'- -CGuuuUGCC----------CGGGGCCGGGUGGa---GGC- -5'
30207 5' -60.9 NC_006273.1 + 136838 0.66 0.806239
Target:  5'- uGCGAcggaGGGCCCCGacGUCC-CCUCUc -3'
miRNA:   3'- -CGUUuug-CCCGGGGC--CGGGuGGAGGc -5'
30207 5' -60.9 NC_006273.1 + 233283 0.66 0.838153
Target:  5'- cGCAAAuCGcGCUCCcGCCggCGCCUCCGu -3'
miRNA:   3'- -CGUUUuGCcCGGGGcCGG--GUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 68216 0.66 0.814441
Target:  5'- gGCGGGuCGGaucacGCCCCcGCCCGCCgacuUCCa -3'
miRNA:   3'- -CGUUUuGCC-----CGGGGcCGGGUGG----AGGc -5'
30207 5' -60.9 NC_006273.1 + 46380 0.66 0.789428
Target:  5'- uCAAAGgGGGCCCCaucauGGCCCagggaucgcgaGCC-CCa -3'
miRNA:   3'- cGUUUUgCCCGGGG-----CCGGG-----------UGGaGGc -5'
30207 5' -60.9 NC_006273.1 + 85608 0.66 0.806239
Target:  5'- uGCA--ACGGaucaccuuGCCauaGCCCACCUCCGa -3'
miRNA:   3'- -CGUuuUGCC--------CGGggcCGGGUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 40239 0.66 0.806239
Target:  5'- gGCAGAACccgguugcGGCCCCGuaCCGCUcuUCUGg -3'
miRNA:   3'- -CGUUUUGc-------CCGGGGCcgGGUGG--AGGC- -5'
30207 5' -60.9 NC_006273.1 + 198617 0.66 0.806239
Target:  5'- -----cUGGGCCUCGGCgugcucaggCCACCcgCCGg -3'
miRNA:   3'- cguuuuGCCCGGGGCCG---------GGUGGa-GGC- -5'
30207 5' -60.9 NC_006273.1 + 30594 0.66 0.806239
Target:  5'- cGCGAGACcGGCggcaCCGGCgCCGCCaagaaaCCGa -3'
miRNA:   3'- -CGUUUUGcCCGg---GGCCG-GGUGGa-----GGC- -5'
30207 5' -60.9 NC_006273.1 + 131887 0.66 0.838153
Target:  5'- cGCAccuGGCGGGCUucuUCGGC--ACCUCCa -3'
miRNA:   3'- -CGUu--UUGCCCGG---GGCCGggUGGAGGc -5'
30207 5' -60.9 NC_006273.1 + 216881 0.66 0.838153
Target:  5'- cGCAGgcccucGAUGGaGCCCagcaugagcaaCGGCuCCACCUCgGu -3'
miRNA:   3'- -CGUU------UUGCC-CGGG-----------GCCG-GGUGGAGgC- -5'
30207 5' -60.9 NC_006273.1 + 81755 0.66 0.821699
Target:  5'- cGCGGAGcCGGGCUgcgaacgcugacgCCGGCCacccgcgaccgCACCgCCGg -3'
miRNA:   3'- -CGUUUU-GCCCGG-------------GGCCGG-----------GUGGaGGC- -5'
30207 5' -60.9 NC_006273.1 + 40609 0.66 0.806239
Target:  5'- cCGAcGCGGcuGCCCCGGCCUuUCaCCGg -3'
miRNA:   3'- cGUUuUGCC--CGGGGCCGGGuGGaGGC- -5'
30207 5' -60.9 NC_006273.1 + 233150 0.66 0.822498
Target:  5'- cGCGGcACGGuccccgacGCCgCCGGaCCCGCCaucgCCGu -3'
miRNA:   3'- -CGUUuUGCC--------CGG-GGCC-GGGUGGa---GGC- -5'
30207 5' -60.9 NC_006273.1 + 187132 0.66 0.838153
Target:  5'- uGCAGAuac-GCUUgGGCUCGCCUCCGu -3'
miRNA:   3'- -CGUUUugccCGGGgCCGGGUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 21259 0.66 0.814441
Target:  5'- aGCGAGugGGGCaaCuGCUgucucgaugCGCCUCCGg -3'
miRNA:   3'- -CGUUUugCCCGggGcCGG---------GUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 234783 0.66 0.838153
Target:  5'- cGCGGAcUGGGuCCCCGaGCgCGcacCCUCCu -3'
miRNA:   3'- -CGUUUuGCCC-GGGGC-CGgGU---GGAGGc -5'
30207 5' -60.9 NC_006273.1 + 192989 0.66 0.830405
Target:  5'- aGCGAcGCGacuuuggggauGGCCUCGuGCUCACCgCCGc -3'
miRNA:   3'- -CGUUuUGC-----------CCGGGGC-CGGGUGGaGGC- -5'
30207 5' -60.9 NC_006273.1 + 142735 0.66 0.838153
Target:  5'- aGCGAGACGGuGCUCaCGGUCUggaugucggGCCugaUCCGc -3'
miRNA:   3'- -CGUUUUGCC-CGGG-GCCGGG---------UGG---AGGC- -5'
30207 5' -60.9 NC_006273.1 + 230862 0.66 0.797899
Target:  5'- -gGGAACGGGUCggcggCCGGUCgGCUUCUGu -3'
miRNA:   3'- cgUUUUGCCCGG-----GGCCGGgUGGAGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.