miRNA display CGI


Results 21 - 40 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30207 5' -60.9 NC_006273.1 + 142735 0.66 0.838153
Target:  5'- aGCGAGACGGuGCUCaCGGUCUggaugucggGCCugaUCCGc -3'
miRNA:   3'- -CGUUUUGCC-CGGG-GCCGGG---------UGG---AGGC- -5'
30207 5' -60.9 NC_006273.1 + 192989 0.66 0.830405
Target:  5'- aGCGAcGCGacuuuggggauGGCCUCGuGCUCACCgCCGc -3'
miRNA:   3'- -CGUUuUGC-----------CCGGGGC-CGGGUGGaGGC- -5'
30207 5' -60.9 NC_006273.1 + 68216 0.66 0.814441
Target:  5'- gGCGGGuCGGaucacGCCCCcGCCCGCCgacuUCCa -3'
miRNA:   3'- -CGUUUuGCC-----CGGGGcCGGGUGG----AGGc -5'
30207 5' -60.9 NC_006273.1 + 125443 0.66 0.813627
Target:  5'- aGCAAAA---GCCCCGGCgCCACCcuugaguuuggucUCCa -3'
miRNA:   3'- -CGUUUUgccCGGGGCCG-GGUGG-------------AGGc -5'
30207 5' -60.9 NC_006273.1 + 21259 0.66 0.814441
Target:  5'- aGCGAGugGGGCaaCuGCUgucucgaugCGCCUCCGg -3'
miRNA:   3'- -CGUUUugCCCGggGcCGG---------GUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 40609 0.66 0.806239
Target:  5'- cCGAcGCGGcuGCCCCGGCCUuUCaCCGg -3'
miRNA:   3'- cGUUuUGCC--CGGGGCCGGGuGGaGGC- -5'
30207 5' -60.9 NC_006273.1 + 216881 0.66 0.838153
Target:  5'- cGCAGgcccucGAUGGaGCCCagcaugagcaaCGGCuCCACCUCgGu -3'
miRNA:   3'- -CGUU------UUGCC-CGGG-----------GCCG-GGUGGAGgC- -5'
30207 5' -60.9 NC_006273.1 + 30594 0.66 0.806239
Target:  5'- cGCGAGACcGGCggcaCCGGCgCCGCCaagaaaCCGa -3'
miRNA:   3'- -CGUUUUGcCCGg---GGCCG-GGUGGa-----GGC- -5'
30207 5' -60.9 NC_006273.1 + 233283 0.66 0.838153
Target:  5'- cGCAAAuCGcGCUCCcGCCggCGCCUCCGu -3'
miRNA:   3'- -CGUUUuGCcCGGGGcCGG--GUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 234783 0.66 0.838153
Target:  5'- cGCGGAcUGGGuCCCCGaGCgCGcacCCUCCu -3'
miRNA:   3'- -CGUUUuGCCC-GGGGC-CGgGU---GGAGGc -5'
30207 5' -60.9 NC_006273.1 + 230862 0.66 0.797899
Target:  5'- -gGGAACGGGUCggcggCCGGUCgGCUUCUGu -3'
miRNA:   3'- cgUUUUGCCCGG-----GGCCGGgUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 134171 0.66 0.830405
Target:  5'- aGCGAcGCGuGGCCgC-GUCCGCCUCgGu -3'
miRNA:   3'- -CGUUuUGC-CCGGgGcCGGGUGGAGgC- -5'
30207 5' -60.9 NC_006273.1 + 81755 0.66 0.821699
Target:  5'- cGCGGAGcCGGGCUgcgaacgcugacgCCGGCCacccgcgaccgCACCgCCGg -3'
miRNA:   3'- -CGUUUU-GCCCGG-------------GGCCGG-----------GUGGaGGC- -5'
30207 5' -60.9 NC_006273.1 + 173640 0.67 0.754378
Target:  5'- ---cAGCGGGUcuCCCGGCUCagcugacuguuaACCUCCu -3'
miRNA:   3'- cguuUUGCCCG--GGGCCGGG------------UGGAGGc -5'
30207 5' -60.9 NC_006273.1 + 192142 0.67 0.751683
Target:  5'- --cAGGCGGcuacagcuccaagcGCCguagCCGGCCCGCCUgCCGa -3'
miRNA:   3'- cguUUUGCC--------------CGG----GGCCGGGUGGA-GGC- -5'
30207 5' -60.9 NC_006273.1 + 234512 0.67 0.745362
Target:  5'- uGCGc--UGGGCCauGGCCgcggaCACCUCCGa -3'
miRNA:   3'- -CGUuuuGCCCGGggCCGG-----GUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 65568 0.67 0.745362
Target:  5'- gGCGAAG-GGGCCcugCCGGCCCuggGCCgcuaCCa -3'
miRNA:   3'- -CGUUUUgCCCGG---GGCCGGG---UGGa---GGc -5'
30207 5' -60.9 NC_006273.1 + 223128 0.67 0.744455
Target:  5'- aGCAccAGACGGGCCUggcuaggUGGCUCAauuuCCUCUa -3'
miRNA:   3'- -CGU--UUUGCCCGGG-------GCCGGGU----GGAGGc -5'
30207 5' -60.9 NC_006273.1 + 128048 0.67 0.736258
Target:  5'- uGCAugGCGGGUUCCgaggguGGUCCGCgUUCCGu -3'
miRNA:   3'- -CGUuuUGCCCGGGG------CCGGGUG-GAGGC- -5'
30207 5' -60.9 NC_006273.1 + 73185 0.67 0.780833
Target:  5'- cGguAGACGcGGCgCCGcaaccaCCGCCUCCGc -3'
miRNA:   3'- -CguUUUGC-CCGgGGCcg----GGUGGAGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.