miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30207 5' -60.9 NC_006273.1 + 198037 1.09 0.001894
Target:  5'- uGCAAAACGGGCCCCGGCCCACCUCCGc -3'
miRNA:   3'- -CGUUUUGCCCGGGGCCGGGUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 164604 0.78 0.222888
Target:  5'- cGCAGuACGGGUCCUGGCCCACgaUCa -3'
miRNA:   3'- -CGUUuUGCCCGGGGCCGGGUGgaGGc -5'
30207 5' -60.9 NC_006273.1 + 93019 0.75 0.324584
Target:  5'- uGCGGAACGcGGCCCgGGCCCGaugCCa -3'
miRNA:   3'- -CGUUUUGC-CCGGGgCCGGGUggaGGc -5'
30207 5' -60.9 NC_006273.1 + 140993 0.75 0.345759
Target:  5'- cCGGAGCGGGCcgcgcccggugCCCGGCCCacgGCC-CCGg -3'
miRNA:   3'- cGUUUUGCCCG-----------GGGCCGGG---UGGaGGC- -5'
30207 5' -60.9 NC_006273.1 + 195962 0.73 0.439951
Target:  5'- gGUAGAaccccGCGGGCCgCCgGGCgCC-CCUCCGa -3'
miRNA:   3'- -CGUUU-----UGCCCGG-GG-CCG-GGuGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 1069 0.73 0.439951
Target:  5'- gGUAGAaccccGCGGGCCgCCgGGCgCC-CCUCCGa -3'
miRNA:   3'- -CGUUU-----UGCCCGG-GG-CCG-GGuGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 55112 0.73 0.439951
Target:  5'- ---cGACGGcGUCCgCGGCUCACCUUCGa -3'
miRNA:   3'- cguuUUGCC-CGGG-GCCGGGUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 197204 0.73 0.448443
Target:  5'- cGCGGcGCGGGCUCgGcGuCCCGCCgUCCGa -3'
miRNA:   3'- -CGUUuUGCCCGGGgC-C-GGGUGG-AGGC- -5'
30207 5' -60.9 NC_006273.1 + 153437 0.72 0.483284
Target:  5'- gGCAcgGCGGGCgCCGGCaagACUUCCa -3'
miRNA:   3'- -CGUuuUGCCCGgGGCCGgg-UGGAGGc -5'
30207 5' -60.9 NC_006273.1 + 47240 0.72 0.483284
Target:  5'- cCGGAACucGGCgaCCCGGCCCGCCggCCGu -3'
miRNA:   3'- cGUUUUGc-CCG--GGGCCGGGUGGa-GGC- -5'
30207 5' -60.9 NC_006273.1 + 141443 0.71 0.510248
Target:  5'- cGCAGGgcgcgccucccGCGGGUCCUGGCCCGCgCaugcgcaCCGg -3'
miRNA:   3'- -CGUUU-----------UGCCCGGGGCCGGGUG-Ga------GGC- -5'
30207 5' -60.9 NC_006273.1 + 205219 0.71 0.528567
Target:  5'- uGCG--ACGGGCCCCcgGGCUCGCCcaCUGa -3'
miRNA:   3'- -CGUuuUGCCCGGGG--CCGGGUGGa-GGC- -5'
30207 5' -60.9 NC_006273.1 + 213521 0.71 0.537819
Target:  5'- -aAGAACGGGgCCgCGGCCCGCagcagCCa -3'
miRNA:   3'- cgUUUUGCCCgGG-GCCGGGUGga---GGc -5'
30207 5' -60.9 NC_006273.1 + 235089 0.71 0.55367
Target:  5'- cGCAAGggaggagucGCGGGCCCCGGggcacacugcacaaCCCGCgUCg- -3'
miRNA:   3'- -CGUUU---------UGCCCGGGGCC--------------GGGUGgAGgc -5'
30207 5' -60.9 NC_006273.1 + 258 0.71 0.55367
Target:  5'- cGCAAGggaggagucGCGGGCCCCGGggcacacugcacaaCCCGCgUCg- -3'
miRNA:   3'- -CGUUU---------UGCCCGGGGCC--------------GGGUGgAGgc -5'
30207 5' -60.9 NC_006273.1 + 40196 0.71 0.55367
Target:  5'- cGCAAGggaggagucGCGGGCCCCGGggcacacugcacaaCCCGCgUCg- -3'
miRNA:   3'- -CGUUU---------UGCCCGGGGCC--------------GGGUGgAGgc -5'
30207 5' -60.9 NC_006273.1 + 90819 0.71 0.556482
Target:  5'- aGCAGAcCGaGGCCgucgcgcaCCGGCUCGCgUCCGu -3'
miRNA:   3'- -CGUUUuGC-CCGG--------GGCCGGGUGgAGGC- -5'
30207 5' -60.9 NC_006273.1 + 89797 0.71 0.556482
Target:  5'- cGCu---CGGGCCCCcGCUCACgUCCc -3'
miRNA:   3'- -CGuuuuGCCCGGGGcCGGGUGgAGGc -5'
30207 5' -60.9 NC_006273.1 + 92567 0.7 0.584806
Target:  5'- aGCAGAccGCGGuGCacgCCCGuGCCCACCagCGa -3'
miRNA:   3'- -CGUUU--UGCC-CG---GGGC-CGGGUGGagGC- -5'
30207 5' -60.9 NC_006273.1 + 178351 0.7 0.584806
Target:  5'- cGCuc-GCGGGCCgCGGa-CGCCUCCu -3'
miRNA:   3'- -CGuuuUGCCCGGgGCCggGUGGAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.