miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30207 5' -60.9 NC_006273.1 + 161641 0.7 0.594314
Target:  5'- cGCugc-CGGGCCUCGGCCgcCGCCgCCa -3'
miRNA:   3'- -CGuuuuGCCCGGGGCCGG--GUGGaGGc -5'
30207 5' -60.9 NC_006273.1 + 94557 0.7 0.603847
Target:  5'- cGCuccucccCGGGCUCCGGCCCGggaucCCUCg- -3'
miRNA:   3'- -CGuuuu---GCCCGGGGCCGGGU-----GGAGgc -5'
30207 5' -60.9 NC_006273.1 + 141048 0.7 0.603847
Target:  5'- gGUggGACGGGCCcgcggacggaCCGGCgCCggGCCUCgGc -3'
miRNA:   3'- -CGuuUUGCCCGG----------GGCCG-GG--UGGAGgC- -5'
30207 5' -60.9 NC_006273.1 + 12175 0.7 0.613397
Target:  5'- cCAGAguacACGGGCCgCGGUCCuCUUCUGa -3'
miRNA:   3'- cGUUU----UGCCCGGgGCCGGGuGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 61244 0.7 0.613397
Target:  5'- aGCAGAuGCGGGCCCaGGUCCAgCCaCUGc -3'
miRNA:   3'- -CGUUU-UGCCCGGGgCCGGGU-GGaGGC- -5'
30207 5' -60.9 NC_006273.1 + 162507 0.69 0.62296
Target:  5'- ---cGACGGugaGUCCCGGCCCuCCUCgCGu -3'
miRNA:   3'- cguuUUGCC---CGGGGCCGGGuGGAG-GC- -5'
30207 5' -60.9 NC_006273.1 + 114260 0.69 0.62296
Target:  5'- uGCAGcGCGGGCCUCaGuacagcgagcacCCCACCUUCa -3'
miRNA:   3'- -CGUUuUGCCCGGGGcC------------GGGUGGAGGc -5'
30207 5' -60.9 NC_006273.1 + 191930 0.69 0.641142
Target:  5'- aCAAgucAGCGGcGCCCgGGUgaaaaccgcguauCCGCCUCCGc -3'
miRNA:   3'- cGUU---UUGCC-CGGGgCCG-------------GGUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 165638 0.69 0.642099
Target:  5'- cGCAGcACGGuGCCgCGGCCCgguCUCUGu -3'
miRNA:   3'- -CGUUuUGCC-CGGgGCCGGGug-GAGGC- -5'
30207 5' -60.9 NC_006273.1 + 63185 0.69 0.651661
Target:  5'- cGCGGccGGCGcGGCCUC-GCCUuuGCCUCCGc -3'
miRNA:   3'- -CGUU--UUGC-CCGGGGcCGGG--UGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 21867 0.69 0.670737
Target:  5'- uGCu--GCGGGCCgCGGCCCcguuCUUUCu -3'
miRNA:   3'- -CGuuuUGCCCGGgGCCGGGu---GGAGGc -5'
30207 5' -60.9 NC_006273.1 + 15649 0.69 0.670737
Target:  5'- aCGAuACGGGCCCgCGGCUgCACUgCCu -3'
miRNA:   3'- cGUUuUGCCCGGG-GCCGG-GUGGaGGc -5'
30207 5' -60.9 NC_006273.1 + 142366 0.69 0.670737
Target:  5'- gGCAu--CGGGCCCgGGCC-GCgUUCCGc -3'
miRNA:   3'- -CGUuuuGCCCGGGgCCGGgUG-GAGGC- -5'
30207 5' -60.9 NC_006273.1 + 156706 0.68 0.680238
Target:  5'- gGCGGugcccGCGGaCCCCGGCCC-CUUCUc -3'
miRNA:   3'- -CGUUu----UGCCcGGGGCCGGGuGGAGGc -5'
30207 5' -60.9 NC_006273.1 + 120134 0.68 0.680238
Target:  5'- aGCAGAGaaccgaGGGCC--GGCUCACCUCUa -3'
miRNA:   3'- -CGUUUUg-----CCCGGggCCGGGUGGAGGc -5'
30207 5' -60.9 NC_006273.1 + 206457 0.68 0.684029
Target:  5'- gGCAAcGCGuGGCCCUGGUCUggcccaaagaccgcuGCCUCg- -3'
miRNA:   3'- -CGUUuUGC-CCGGGGCCGGG---------------UGGAGgc -5'
30207 5' -60.9 NC_006273.1 + 73387 0.68 0.689704
Target:  5'- cGCAAAgcgcGCGGGCagCCaCGGCCCAgaCUgCGg -3'
miRNA:   3'- -CGUUU----UGCCCG--GG-GCCGGGUg-GAgGC- -5'
30207 5' -60.9 NC_006273.1 + 229039 0.68 0.689704
Target:  5'- gGCGuauuccuCGGGuuCCUCGGCCUcuuCCUCCGg -3'
miRNA:   3'- -CGUuuu----GCCC--GGGGCCGGGu--GGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 140477 0.68 0.689704
Target:  5'- aGCuccuGAcCGGGCCCCcaGCCCccaACCUuCCGg -3'
miRNA:   3'- -CGu---UUuGCCCGGGGc-CGGG---UGGA-GGC- -5'
30207 5' -60.9 NC_006273.1 + 139337 0.68 0.689704
Target:  5'- cCGAGGCGGuGCCCgCGacucGCCCcuCCUCCa -3'
miRNA:   3'- cGUUUUGCC-CGGG-GC----CGGGu-GGAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.