miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30207 5' -60.9 NC_006273.1 + 68216 0.66 0.814441
Target:  5'- gGCGGGuCGGaucacGCCCCcGCCCGCCgacuUCCa -3'
miRNA:   3'- -CGUUUuGCC-----CGGGGcCGGGUGG----AGGc -5'
30207 5' -60.9 NC_006273.1 + 21259 0.66 0.814441
Target:  5'- aGCGAGugGGGCaaCuGCUgucucgaugCGCCUCCGg -3'
miRNA:   3'- -CGUUUugCCCGggGcCGG---------GUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 166039 0.66 0.814441
Target:  5'- aGguAAAUGGGCUcgCCGGCCUgcgugacgauuuGCCgcaugCCGa -3'
miRNA:   3'- -CguUUUGCCCGG--GGCCGGG------------UGGa----GGC- -5'
30207 5' -60.9 NC_006273.1 + 125443 0.66 0.813627
Target:  5'- aGCAAAA---GCCCCGGCgCCACCcuugaguuuggucUCCa -3'
miRNA:   3'- -CGUUUUgccCGGGGCCG-GGUGG-------------AGGc -5'
30207 5' -60.9 NC_006273.1 + 40609 0.66 0.806239
Target:  5'- cCGAcGCGGcuGCCCCGGCCUuUCaCCGg -3'
miRNA:   3'- cGUUuUGCC--CGGGGCCGGGuGGaGGC- -5'
30207 5' -60.9 NC_006273.1 + 198617 0.66 0.806239
Target:  5'- -----cUGGGCCUCGGCgugcucaggCCACCcgCCGg -3'
miRNA:   3'- cguuuuGCCCGGGGCCG---------GGUGGa-GGC- -5'
30207 5' -60.9 NC_006273.1 + 30594 0.66 0.806239
Target:  5'- cGCGAGACcGGCggcaCCGGCgCCGCCaagaaaCCGa -3'
miRNA:   3'- -CGUUUUGcCCGg---GGCCG-GGUGGa-----GGC- -5'
30207 5' -60.9 NC_006273.1 + 136838 0.66 0.806239
Target:  5'- uGCGAcggaGGGCCCCGacGUCC-CCUCUc -3'
miRNA:   3'- -CGUUuug-CCCGGGGC--CGGGuGGAGGc -5'
30207 5' -60.9 NC_006273.1 + 85608 0.66 0.806239
Target:  5'- uGCA--ACGGaucaccuuGCCauaGCCCACCUCCGa -3'
miRNA:   3'- -CGUuuUGCC--------CGGggcCGGGUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 40239 0.66 0.806239
Target:  5'- gGCAGAACccgguugcGGCCCCGuaCCGCUcuUCUGg -3'
miRNA:   3'- -CGUUUUGc-------CCGGGGCcgGGUGG--AGGC- -5'
30207 5' -60.9 NC_006273.1 + 73574 0.66 0.797899
Target:  5'- cGC---GCGGacccuccgauGUCCUGGCCCGCCgcugCCGc -3'
miRNA:   3'- -CGuuuUGCC----------CGGGGCCGGGUGGa---GGC- -5'
30207 5' -60.9 NC_006273.1 + 230862 0.66 0.797899
Target:  5'- -gGGAACGGGUCggcggCCGGUCgGCUUCUGu -3'
miRNA:   3'- cgUUUUGCCCGG-----GGCCGGgUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 46380 0.66 0.789428
Target:  5'- uCAAAGgGGGCCCCaucauGGCCCagggaucgcgaGCC-CCa -3'
miRNA:   3'- cGUUUUgCCCGGGG-----CCGGG-----------UGGaGGc -5'
30207 5' -60.9 NC_006273.1 + 188062 0.67 0.780833
Target:  5'- gGCGGcGCGGGUCUCGucucGUCCACCauuUCCa -3'
miRNA:   3'- -CGUUuUGCCCGGGGC----CGGGUGG---AGGc -5'
30207 5' -60.9 NC_006273.1 + 174372 0.67 0.780833
Target:  5'- ---uGACGGGCccgaaacacguCCCGGCaucuacgugcUCACCUCCa -3'
miRNA:   3'- cguuUUGCCCG-----------GGGCCG----------GGUGGAGGc -5'
30207 5' -60.9 NC_006273.1 + 166573 0.67 0.780833
Target:  5'- cGC---GCGGcGCCgCCGGCUaCGCgUCCGg -3'
miRNA:   3'- -CGuuuUGCC-CGG-GGCCGG-GUGgAGGC- -5'
30207 5' -60.9 NC_006273.1 + 39619 0.67 0.780833
Target:  5'- uGCGc--UGGGCCauGGCCgccggaCACCUCCGa -3'
miRNA:   3'- -CGUuuuGCCCGGggCCGG------GUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 73185 0.67 0.780833
Target:  5'- cGguAGACGcGGCgCCGcaaccaCCGCCUCCGc -3'
miRNA:   3'- -CguUUUGC-CCGgGGCcg----GGUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 114817 0.67 0.780833
Target:  5'- gGCAAGACGccuuGCCCgGGCCaugcauCGCCUCg- -3'
miRNA:   3'- -CGUUUUGCc---CGGGgCCGG------GUGGAGgc -5'
30207 5' -60.9 NC_006273.1 + 188974 0.67 0.772121
Target:  5'- gGCAGuGGCGGGCCCgauggGGCUCGCgaUCCc -3'
miRNA:   3'- -CGUU-UUGCCCGGGg----CCGGGUGg-AGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.