miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30207 5' -60.9 NC_006273.1 + 37208 0.67 0.772121
Target:  5'- uGCGAgaGAUGGGCCgCGGUUCuauCC-CCGa -3'
miRNA:   3'- -CGUU--UUGCCCGGgGCCGGGu--GGaGGC- -5'
30207 5' -60.9 NC_006273.1 + 188974 0.67 0.772121
Target:  5'- gGCAGuGGCGGGCCCgauggGGCUCGCgaUCCc -3'
miRNA:   3'- -CGUU-UUGCCCGGGg----CCGGGUGg-AGGc -5'
30207 5' -60.9 NC_006273.1 + 218797 0.67 0.772121
Target:  5'- gGCcAAGCGGGCggCUGGCgCUACCUCg- -3'
miRNA:   3'- -CGuUUUGCCCGg-GGCCG-GGUGGAGgc -5'
30207 5' -60.9 NC_006273.1 + 152030 0.67 0.772121
Target:  5'- cGCGGGuccucccaccACGGcGCCgCCGGguCCCACCacgCCGg -3'
miRNA:   3'- -CGUUU----------UGCC-CGG-GGCC--GGGUGGa--GGC- -5'
30207 5' -60.9 NC_006273.1 + 21410 0.67 0.772121
Target:  5'- cGCAcGACuGGCCagaggucucuauCCGaGUCCACCUCUGc -3'
miRNA:   3'- -CGUuUUGcCCGG------------GGC-CGGGUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 104398 0.67 0.763301
Target:  5'- gGCgAAGACGGGCgCCa-CCCGCCgcgagUCCGa -3'
miRNA:   3'- -CG-UUUUGCCCGgGGccGGGUGG-----AGGC- -5'
30207 5' -60.9 NC_006273.1 + 173640 0.67 0.754378
Target:  5'- ---cAGCGGGUcuCCCGGCUCagcugacuguuaACCUCCu -3'
miRNA:   3'- cguuUUGCCCG--GGGCCGGG------------UGGAGGc -5'
30207 5' -60.9 NC_006273.1 + 34757 0.67 0.754378
Target:  5'- cGCGGAcuCGGuGCCCCGGCCC-CUg--- -3'
miRNA:   3'- -CGUUUu-GCC-CGGGGCCGGGuGGaggc -5'
30207 5' -60.9 NC_006273.1 + 198235 0.67 0.754378
Target:  5'- aCAucuuCGGGCCacaggccaCGGCCgccagCACCUCCGc -3'
miRNA:   3'- cGUuuu-GCCCGGg-------GCCGG-----GUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 192142 0.67 0.751683
Target:  5'- --cAGGCGGcuacagcuccaagcGCCguagCCGGCCCGCCUgCCGa -3'
miRNA:   3'- cguUUUGCC--------------CGG----GGCCGGGUGGA-GGC- -5'
30207 5' -60.9 NC_006273.1 + 65568 0.67 0.745362
Target:  5'- gGCGAAG-GGGCCcugCCGGCCCuggGCCgcuaCCa -3'
miRNA:   3'- -CGUUUUgCCCGG---GGCCGGG---UGGa---GGc -5'
30207 5' -60.9 NC_006273.1 + 234512 0.67 0.745362
Target:  5'- uGCGc--UGGGCCauGGCCgcggaCACCUCCGa -3'
miRNA:   3'- -CGUuuuGCCCGGggCCGG-----GUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 223128 0.67 0.744455
Target:  5'- aGCAccAGACGGGCCUggcuaggUGGCUCAauuuCCUCUa -3'
miRNA:   3'- -CGU--UUUGCCCGGG-------GCCGGGU----GGAGGc -5'
30207 5' -60.9 NC_006273.1 + 85935 0.67 0.736258
Target:  5'- cGUGGAGCGGacuaCCaCCGGCgCCGCCguugCCGu -3'
miRNA:   3'- -CGUUUUGCCc---GG-GGCCG-GGUGGa---GGC- -5'
30207 5' -60.9 NC_006273.1 + 94386 0.67 0.736258
Target:  5'- cGUggGcCGGGCaCCgggcgCGGCCCG-CUCCGg -3'
miRNA:   3'- -CGuuUuGCCCG-GG-----GCCGGGUgGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 87881 0.67 0.736258
Target:  5'- aGC-GAGCGGGCCgCCgcuaucgccauGGCCC-CCUCg- -3'
miRNA:   3'- -CGuUUUGCCCGG-GG-----------CCGGGuGGAGgc -5'
30207 5' -60.9 NC_006273.1 + 128048 0.67 0.736258
Target:  5'- uGCAugGCGGGUUCCgaggguGGUCCGCgUUCCGu -3'
miRNA:   3'- -CGUuuUGCCCGGGG------CCGGGUG-GAGGC- -5'
30207 5' -60.9 NC_006273.1 + 94583 0.68 0.727075
Target:  5'- aGCGAGACGGGCUUuaaaGGCaaaugCACCUCg- -3'
miRNA:   3'- -CGUUUUGCCCGGGg---CCGg----GUGGAGgc -5'
30207 5' -60.9 NC_006273.1 + 39475 0.68 0.726153
Target:  5'- cGCGGAACagcgccaacugcuGGGCaCCGuGgCCACCUCCu -3'
miRNA:   3'- -CGUUUUG-------------CCCGgGGC-CgGGUGGAGGc -5'
30207 5' -60.9 NC_006273.1 + 88587 0.68 0.699128
Target:  5'- gGCGGccAUGGGCgCCGGCaCGCCUgCGg -3'
miRNA:   3'- -CGUUu-UGCCCGgGGCCGgGUGGAgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.