miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30207 5' -60.9 NC_006273.1 + 258 0.71 0.55367
Target:  5'- cGCAAGggaggagucGCGGGCCCCGGggcacacugcacaaCCCGCgUCg- -3'
miRNA:   3'- -CGUUU---------UGCCCGGGGCC--------------GGGUGgAGgc -5'
30207 5' -60.9 NC_006273.1 + 1069 0.73 0.439951
Target:  5'- gGUAGAaccccGCGGGCCgCCgGGCgCC-CCUCCGa -3'
miRNA:   3'- -CGUUU-----UGCCCGG-GG-CCG-GGuGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 12175 0.7 0.613397
Target:  5'- cCAGAguacACGGGCCgCGGUCCuCUUCUGa -3'
miRNA:   3'- cGUUU----UGCCCGGgGCCGGGuGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 15649 0.69 0.670737
Target:  5'- aCGAuACGGGCCCgCGGCUgCACUgCCu -3'
miRNA:   3'- cGUUuUGCCCGGG-GCCGG-GUGGaGGc -5'
30207 5' -60.9 NC_006273.1 + 21259 0.66 0.814441
Target:  5'- aGCGAGugGGGCaaCuGCUgucucgaugCGCCUCCGg -3'
miRNA:   3'- -CGUUUugCCCGggGcCGG---------GUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 21410 0.67 0.772121
Target:  5'- cGCAcGACuGGCCagaggucucuauCCGaGUCCACCUCUGc -3'
miRNA:   3'- -CGUuUUGcCCGG------------GGC-CGGGUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 21867 0.69 0.670737
Target:  5'- uGCu--GCGGGCCgCGGCCCcguuCUUUCu -3'
miRNA:   3'- -CGuuuUGCCCGGgGCCGGGu---GGAGGc -5'
30207 5' -60.9 NC_006273.1 + 30594 0.66 0.806239
Target:  5'- cGCGAGACcGGCggcaCCGGCgCCGCCaagaaaCCGa -3'
miRNA:   3'- -CGUUUUGcCCGg---GGCCG-GGUGGa-----GGC- -5'
30207 5' -60.9 NC_006273.1 + 34757 0.67 0.754378
Target:  5'- cGCGGAcuCGGuGCCCCGGCCC-CUg--- -3'
miRNA:   3'- -CGUUUu-GCC-CGGGGCCGGGuGGaggc -5'
30207 5' -60.9 NC_006273.1 + 37208 0.67 0.772121
Target:  5'- uGCGAgaGAUGGGCCgCGGUUCuauCC-CCGa -3'
miRNA:   3'- -CGUU--UUGCCCGGgGCCGGGu--GGaGGC- -5'
30207 5' -60.9 NC_006273.1 + 38257 0.66 0.822498
Target:  5'- cGCGGcACGGuccccgacGCCgCCGGaCCCGCCaucgCCGu -3'
miRNA:   3'- -CGUUuUGCC--------CGG-GGCC-GGGUGGa---GGC- -5'
30207 5' -60.9 NC_006273.1 + 38390 0.66 0.838153
Target:  5'- cGCAAAuCGcGCUCCcGCCggCGCCUCCGu -3'
miRNA:   3'- -CGUUUuGCcCGGGGcCGG--GUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 39475 0.68 0.726153
Target:  5'- cGCGGAACagcgccaacugcuGGGCaCCGuGgCCACCUCCu -3'
miRNA:   3'- -CGUUUUG-------------CCCGgGGC-CgGGUGGAGGc -5'
30207 5' -60.9 NC_006273.1 + 39619 0.67 0.780833
Target:  5'- uGCGc--UGGGCCauGGCCgccggaCACCUCCGa -3'
miRNA:   3'- -CGUuuuGCCCGGggCCGG------GUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 40196 0.71 0.55367
Target:  5'- cGCAAGggaggagucGCGGGCCCCGGggcacacugcacaaCCCGCgUCg- -3'
miRNA:   3'- -CGUUU---------UGCCCGGGGCC--------------GGGUGgAGgc -5'
30207 5' -60.9 NC_006273.1 + 40239 0.66 0.806239
Target:  5'- gGCAGAACccgguugcGGCCCCGuaCCGCUcuUCUGg -3'
miRNA:   3'- -CGUUUUGc-------CCGGGGCcgGGUGG--AGGC- -5'
30207 5' -60.9 NC_006273.1 + 40609 0.66 0.806239
Target:  5'- cCGAcGCGGcuGCCCCGGCCUuUCaCCGg -3'
miRNA:   3'- cGUUuUGCC--CGGGGCCGGGuGGaGGC- -5'
30207 5' -60.9 NC_006273.1 + 46380 0.66 0.789428
Target:  5'- uCAAAGgGGGCCCCaucauGGCCCagggaucgcgaGCC-CCa -3'
miRNA:   3'- cGUUUUgCCCGGGG-----CCGGG-----------UGGaGGc -5'
30207 5' -60.9 NC_006273.1 + 47240 0.72 0.483284
Target:  5'- cCGGAACucGGCgaCCCGGCCCGCCggCCGu -3'
miRNA:   3'- cGUUUUGc-CCG--GGGCCGGGUGGa-GGC- -5'
30207 5' -60.9 NC_006273.1 + 55112 0.73 0.439951
Target:  5'- ---cGACGGcGUCCgCGGCUCACCUUCGa -3'
miRNA:   3'- cguuUUGCC-CGGG-GCCGGGUGGAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.