miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30207 5' -60.9 NC_006273.1 + 60144 0.68 0.699128
Target:  5'- uGCAGAGCGaaGCCCCGaaaucGUCCuCCUCCu -3'
miRNA:   3'- -CGUUUUGCc-CGGGGC-----CGGGuGGAGGc -5'
30207 5' -60.9 NC_006273.1 + 61244 0.7 0.613397
Target:  5'- aGCAGAuGCGGGCCCaGGUCCAgCCaCUGc -3'
miRNA:   3'- -CGUUU-UGCCCGGGgCCGGGU-GGaGGC- -5'
30207 5' -60.9 NC_006273.1 + 63185 0.69 0.651661
Target:  5'- cGCGGccGGCGcGGCCUC-GCCUuuGCCUCCGc -3'
miRNA:   3'- -CGUU--UUGC-CCGGGGcCGGG--UGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 65568 0.67 0.745362
Target:  5'- gGCGAAG-GGGCCcugCCGGCCCuggGCCgcuaCCa -3'
miRNA:   3'- -CGUUUUgCCCGG---GGCCGGG---UGGa---GGc -5'
30207 5' -60.9 NC_006273.1 + 68216 0.66 0.814441
Target:  5'- gGCGGGuCGGaucacGCCCCcGCCCGCCgacuUCCa -3'
miRNA:   3'- -CGUUUuGCC-----CGGGGcCGGGUGG----AGGc -5'
30207 5' -60.9 NC_006273.1 + 70835 0.66 0.838153
Target:  5'- gGCAcgcuGGCGGGCCgaccgCCGcGCCCucCCUCa- -3'
miRNA:   3'- -CGUu---UUGCCCGG-----GGC-CGGGu-GGAGgc -5'
30207 5' -60.9 NC_006273.1 + 73185 0.67 0.780833
Target:  5'- cGguAGACGcGGCgCCGcaaccaCCGCCUCCGc -3'
miRNA:   3'- -CguUUUGC-CCGgGGCcg----GGUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 73387 0.68 0.689704
Target:  5'- cGCAAAgcgcGCGGGCagCCaCGGCCCAgaCUgCGg -3'
miRNA:   3'- -CGUUU----UGCCCG--GG-GCCGGGUg-GAgGC- -5'
30207 5' -60.9 NC_006273.1 + 73574 0.66 0.797899
Target:  5'- cGC---GCGGacccuccgauGUCCUGGCCCGCCgcugCCGc -3'
miRNA:   3'- -CGuuuUGCC----------CGGGGCCGGGUGGa---GGC- -5'
30207 5' -60.9 NC_006273.1 + 78673 0.66 0.830405
Target:  5'- cGCGAGAagGGGCCgggguccgCgGGCaCCGCCgCCGg -3'
miRNA:   3'- -CGUUUUg-CCCGG--------GgCCG-GGUGGaGGC- -5'
30207 5' -60.9 NC_006273.1 + 81755 0.66 0.821699
Target:  5'- cGCGGAGcCGGGCUgcgaacgcugacgCCGGCCacccgcgaccgCACCgCCGg -3'
miRNA:   3'- -CGUUUU-GCCCGG-------------GGCCGG-----------GUGGaGGC- -5'
30207 5' -60.9 NC_006273.1 + 85608 0.66 0.806239
Target:  5'- uGCA--ACGGaucaccuuGCCauaGCCCACCUCCGa -3'
miRNA:   3'- -CGUuuUGCC--------CGGggcCGGGUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 85935 0.67 0.736258
Target:  5'- cGUGGAGCGGacuaCCaCCGGCgCCGCCguugCCGu -3'
miRNA:   3'- -CGUUUUGCCc---GG-GGCCG-GGUGGa---GGC- -5'
30207 5' -60.9 NC_006273.1 + 87881 0.67 0.736258
Target:  5'- aGC-GAGCGGGCCgCCgcuaucgccauGGCCC-CCUCg- -3'
miRNA:   3'- -CGuUUUGCCCGG-GG-----------CCGGGuGGAGgc -5'
30207 5' -60.9 NC_006273.1 + 88587 0.68 0.699128
Target:  5'- gGCGGccAUGGGCgCCGGCaCGCCUgCGg -3'
miRNA:   3'- -CGUUu-UGCCCGgGGCCGgGUGGAgGC- -5'
30207 5' -60.9 NC_006273.1 + 88892 0.66 0.830405
Target:  5'- uCAAGuacCaGGCgCUGGCCacaGCCUCCGg -3'
miRNA:   3'- cGUUUu--GcCCGgGGCCGGg--UGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 89797 0.71 0.556482
Target:  5'- cGCu---CGGGCCCCcGCUCACgUCCc -3'
miRNA:   3'- -CGuuuuGCCCGGGGcCGGGUGgAGGc -5'
30207 5' -60.9 NC_006273.1 + 90610 0.68 0.699128
Target:  5'- uGCAAcAGCGaGGCCaCGGCCgccgcgucgUGCCUCCGc -3'
miRNA:   3'- -CGUU-UUGC-CCGGgGCCGG---------GUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 90819 0.71 0.556482
Target:  5'- aGCAGAcCGaGGCCgucgcgcaCCGGCUCGCgUCCGu -3'
miRNA:   3'- -CGUUUuGC-CCGG--------GGCCGGGUGgAGGC- -5'
30207 5' -60.9 NC_006273.1 + 92223 0.66 0.822498
Target:  5'- aGCAGuuggggauGCGGcGCgCCGuGCCCGUCUCCu -3'
miRNA:   3'- -CGUUu-------UGCC-CGgGGC-CGGGUGGAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.