miRNA display CGI


Results 1 - 20 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30207 5' -60.9 NC_006273.1 + 235089 0.71 0.55367
Target:  5'- cGCAAGggaggagucGCGGGCCCCGGggcacacugcacaaCCCGCgUCg- -3'
miRNA:   3'- -CGUUU---------UGCCCGGGGCC--------------GGGUGgAGgc -5'
30207 5' -60.9 NC_006273.1 + 234783 0.66 0.838153
Target:  5'- cGCGGAcUGGGuCCCCGaGCgCGcacCCUCCu -3'
miRNA:   3'- -CGUUUuGCCC-GGGGC-CGgGU---GGAGGc -5'
30207 5' -60.9 NC_006273.1 + 234512 0.67 0.745362
Target:  5'- uGCGc--UGGGCCauGGCCgcggaCACCUCCGa -3'
miRNA:   3'- -CGUuuuGCCCGGggCCGG-----GUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 233283 0.66 0.838153
Target:  5'- cGCAAAuCGcGCUCCcGCCggCGCCUCCGu -3'
miRNA:   3'- -CGUUUuGCcCGGGGcCGG--GUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 233150 0.66 0.822498
Target:  5'- cGCGGcACGGuccccgacGCCgCCGGaCCCGCCaucgCCGu -3'
miRNA:   3'- -CGUUuUGCC--------CGG-GGCC-GGGUGGa---GGC- -5'
30207 5' -60.9 NC_006273.1 + 230862 0.66 0.797899
Target:  5'- -gGGAACGGGUCggcggCCGGUCgGCUUCUGu -3'
miRNA:   3'- cgUUUUGCCCGG-----GGCCGGgUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 229039 0.68 0.689704
Target:  5'- gGCGuauuccuCGGGuuCCUCGGCCUcuuCCUCCGg -3'
miRNA:   3'- -CGUuuu----GCCC--GGGGCCGGGu--GGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 223128 0.67 0.744455
Target:  5'- aGCAccAGACGGGCCUggcuaggUGGCUCAauuuCCUCUa -3'
miRNA:   3'- -CGU--UUUGCCCGGG-------GCCGGGU----GGAGGc -5'
30207 5' -60.9 NC_006273.1 + 218797 0.67 0.772121
Target:  5'- gGCcAAGCGGGCggCUGGCgCUACCUCg- -3'
miRNA:   3'- -CGuUUUGCCCGg-GGCCG-GGUGGAGgc -5'
30207 5' -60.9 NC_006273.1 + 216881 0.66 0.838153
Target:  5'- cGCAGgcccucGAUGGaGCCCagcaugagcaaCGGCuCCACCUCgGu -3'
miRNA:   3'- -CGUU------UUGCC-CGGG-----------GCCG-GGUGGAGgC- -5'
30207 5' -60.9 NC_006273.1 + 213521 0.71 0.537819
Target:  5'- -aAGAACGGGgCCgCGGCCCGCagcagCCa -3'
miRNA:   3'- cgUUUUGCCCgGG-GCCGGGUGga---GGc -5'
30207 5' -60.9 NC_006273.1 + 206457 0.68 0.684029
Target:  5'- gGCAAcGCGuGGCCCUGGUCUggcccaaagaccgcuGCCUCg- -3'
miRNA:   3'- -CGUUuUGC-CCGGGGCCGGG---------------UGGAGgc -5'
30207 5' -60.9 NC_006273.1 + 205219 0.71 0.528567
Target:  5'- uGCG--ACGGGCCCCcgGGCUCGCCcaCUGa -3'
miRNA:   3'- -CGUuuUGCCCGGGG--CCGGGUGGa-GGC- -5'
30207 5' -60.9 NC_006273.1 + 198617 0.66 0.806239
Target:  5'- -----cUGGGCCUCGGCgugcucaggCCACCcgCCGg -3'
miRNA:   3'- cguuuuGCCCGGGGCCG---------GGUGGa-GGC- -5'
30207 5' -60.9 NC_006273.1 + 198235 0.67 0.754378
Target:  5'- aCAucuuCGGGCCacaggccaCGGCCgccagCACCUCCGc -3'
miRNA:   3'- cGUuuu-GCCCGGg-------GCCGG-----GUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 198037 1.09 0.001894
Target:  5'- uGCAAAACGGGCCCCGGCCCACCUCCGc -3'
miRNA:   3'- -CGUUUUGCCCGGGGCCGGGUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 197204 0.73 0.448443
Target:  5'- cGCGGcGCGGGCUCgGcGuCCCGCCgUCCGa -3'
miRNA:   3'- -CGUUuUGCCCGGGgC-C-GGGUGG-AGGC- -5'
30207 5' -60.9 NC_006273.1 + 195962 0.73 0.439951
Target:  5'- gGUAGAaccccGCGGGCCgCCgGGCgCC-CCUCCGa -3'
miRNA:   3'- -CGUUU-----UGCCCGG-GG-CCG-GGuGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 192989 0.66 0.830405
Target:  5'- aGCGAcGCGacuuuggggauGGCCUCGuGCUCACCgCCGc -3'
miRNA:   3'- -CGUUuUGC-----------CCGGGGC-CGGGUGGaGGC- -5'
30207 5' -60.9 NC_006273.1 + 192142 0.67 0.751683
Target:  5'- --cAGGCGGcuacagcuccaagcGCCguagCCGGCCCGCCUgCCGa -3'
miRNA:   3'- cguUUUGCC--------------CGG----GGCCGGGUGGA-GGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.