miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30207 5' -60.9 NC_006273.1 + 144055 0.68 0.699128
Target:  5'- uGCu--GCGGGCCCaCGGUaCGCCaguagCCGa -3'
miRNA:   3'- -CGuuuUGCCCGGG-GCCGgGUGGa----GGC- -5'
30207 5' -60.9 NC_006273.1 + 162507 0.69 0.62296
Target:  5'- ---cGACGGugaGUCCCGGCCCuCCUCgCGu -3'
miRNA:   3'- cguuUUGCC---CGGGGCCGGGuGGAG-GC- -5'
30207 5' -60.9 NC_006273.1 + 63185 0.69 0.651661
Target:  5'- cGCGGccGGCGcGGCCUC-GCCUuuGCCUCCGc -3'
miRNA:   3'- -CGUU--UUGC-CCGGGGcCGGG--UGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 142366 0.69 0.670737
Target:  5'- gGCAu--CGGGCCCgGGCC-GCgUUCCGc -3'
miRNA:   3'- -CGUuuuGCCCGGGgCCGGgUG-GAGGC- -5'
30207 5' -60.9 NC_006273.1 + 120134 0.68 0.680238
Target:  5'- aGCAGAGaaccgaGGGCC--GGCUCACCUCUa -3'
miRNA:   3'- -CGUUUUg-----CCCGGggCCGGGUGGAGGc -5'
30207 5' -60.9 NC_006273.1 + 156706 0.68 0.680238
Target:  5'- gGCGGugcccGCGGaCCCCGGCCC-CUUCUc -3'
miRNA:   3'- -CGUUu----UGCCcGGGGCCGGGuGGAGGc -5'
30207 5' -60.9 NC_006273.1 + 73387 0.68 0.689704
Target:  5'- cGCAAAgcgcGCGGGCagCCaCGGCCCAgaCUgCGg -3'
miRNA:   3'- -CGUUU----UGCCCG--GG-GCCGGGUg-GAgGC- -5'
30207 5' -60.9 NC_006273.1 + 229039 0.68 0.689704
Target:  5'- gGCGuauuccuCGGGuuCCUCGGCCUcuuCCUCCGg -3'
miRNA:   3'- -CGUuuu----GCCC--GGGGCCGGGu--GGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 60144 0.68 0.699128
Target:  5'- uGCAGAGCGaaGCCCCGaaaucGUCCuCCUCCu -3'
miRNA:   3'- -CGUUUUGCc-CGGGGC-----CGGGuGGAGGc -5'
30207 5' -60.9 NC_006273.1 + 61244 0.7 0.613397
Target:  5'- aGCAGAuGCGGGCCCaGGUCCAgCCaCUGc -3'
miRNA:   3'- -CGUUU-UGCCCGGGgCCGGGU-GGaGGC- -5'
30207 5' -60.9 NC_006273.1 + 94557 0.7 0.603847
Target:  5'- cGCuccucccCGGGCUCCGGCCCGggaucCCUCg- -3'
miRNA:   3'- -CGuuuu---GCCCGGGGCCGGGU-----GGAGgc -5'
30207 5' -60.9 NC_006273.1 + 178351 0.7 0.584806
Target:  5'- cGCuc-GCGGGCCgCGGa-CGCCUCCu -3'
miRNA:   3'- -CGuuuUGCCCGGgGCCggGUGGAGGc -5'
30207 5' -60.9 NC_006273.1 + 164604 0.78 0.222888
Target:  5'- cGCAGuACGGGUCCUGGCCCACgaUCa -3'
miRNA:   3'- -CGUUuUGCCCGGGGCCGGGUGgaGGc -5'
30207 5' -60.9 NC_006273.1 + 55112 0.73 0.439951
Target:  5'- ---cGACGGcGUCCgCGGCUCACCUUCGa -3'
miRNA:   3'- cguuUUGCC-CGGG-GCCGGGUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 195962 0.73 0.439951
Target:  5'- gGUAGAaccccGCGGGCCgCCgGGCgCC-CCUCCGa -3'
miRNA:   3'- -CGUUU-----UGCCCGG-GG-CCG-GGuGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 153437 0.72 0.483284
Target:  5'- gGCAcgGCGGGCgCCGGCaagACUUCCa -3'
miRNA:   3'- -CGUuuUGCCCGgGGCCGgg-UGGAGGc -5'
30207 5' -60.9 NC_006273.1 + 213521 0.71 0.537819
Target:  5'- -aAGAACGGGgCCgCGGCCCGCagcagCCa -3'
miRNA:   3'- cgUUUUGCCCgGG-GCCGGGUGga---GGc -5'
30207 5' -60.9 NC_006273.1 + 258 0.71 0.55367
Target:  5'- cGCAAGggaggagucGCGGGCCCCGGggcacacugcacaaCCCGCgUCg- -3'
miRNA:   3'- -CGUUU---------UGCCCGGGGCC--------------GGGUGgAGgc -5'
30207 5' -60.9 NC_006273.1 + 235089 0.71 0.55367
Target:  5'- cGCAAGggaggagucGCGGGCCCCGGggcacacugcacaaCCCGCgUCg- -3'
miRNA:   3'- -CGUUU---------UGCCCGGGGCC--------------GGGUGgAGgc -5'
30207 5' -60.9 NC_006273.1 + 89797 0.71 0.556482
Target:  5'- cGCu---CGGGCCCCcGCUCACgUCCc -3'
miRNA:   3'- -CGuuuuGCCCGGGGcCGGGUGgAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.