miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30207 5' -60.9 NC_006273.1 + 93019 0.75 0.324584
Target:  5'- uGCGGAACGcGGCCCgGGCCCGaugCCa -3'
miRNA:   3'- -CGUUUUGC-CCGGGgCCGGGUggaGGc -5'
30207 5' -60.9 NC_006273.1 + 21867 0.69 0.670737
Target:  5'- uGCu--GCGGGCCgCGGCCCcguuCUUUCu -3'
miRNA:   3'- -CGuuuUGCCCGGgGCCGGGu---GGAGGc -5'
30207 5' -60.9 NC_006273.1 + 140477 0.68 0.689704
Target:  5'- aGCuccuGAcCGGGCCCCcaGCCCccaACCUuCCGg -3'
miRNA:   3'- -CGu---UUuGCCCGGGGc-CGGG---UGGA-GGC- -5'
30207 5' -60.9 NC_006273.1 + 131887 0.66 0.838153
Target:  5'- cGCAccuGGCGGGCUucuUCGGC--ACCUCCa -3'
miRNA:   3'- -CGUu--UUGCCCGG---GGCCGggUGGAGGc -5'
30207 5' -60.9 NC_006273.1 + 47240 0.72 0.483284
Target:  5'- cCGGAACucGGCgaCCCGGCCCGCCggCCGu -3'
miRNA:   3'- cGUUUUGc-CCG--GGGCCGGGUGGa-GGC- -5'
30207 5' -60.9 NC_006273.1 + 141443 0.71 0.510248
Target:  5'- cGCAGGgcgcgccucccGCGGGUCCUGGCCCGCgCaugcgcaCCGg -3'
miRNA:   3'- -CGUUU-----------UGCCCGGGGCCGGGUG-Ga------GGC- -5'
30207 5' -60.9 NC_006273.1 + 40196 0.71 0.55367
Target:  5'- cGCAAGggaggagucGCGGGCCCCGGggcacacugcacaaCCCGCgUCg- -3'
miRNA:   3'- -CGUUU---------UGCCCGGGGCC--------------GGGUGgAGgc -5'
30207 5' -60.9 NC_006273.1 + 90819 0.71 0.556482
Target:  5'- aGCAGAcCGaGGCCgucgcgcaCCGGCUCGCgUCCGu -3'
miRNA:   3'- -CGUUUuGC-CCGG--------GGCCGGGUGgAGGC- -5'
30207 5' -60.9 NC_006273.1 + 141048 0.7 0.603847
Target:  5'- gGUggGACGGGCCcgcggacggaCCGGCgCCggGCCUCgGc -3'
miRNA:   3'- -CGuuUUGCCCGG----------GGCCG-GG--UGGAGgC- -5'
30207 5' -60.9 NC_006273.1 + 15649 0.69 0.670737
Target:  5'- aCGAuACGGGCCCgCGGCUgCACUgCCu -3'
miRNA:   3'- cGUUuUGCCCGGG-GCCGG-GUGGaGGc -5'
30207 5' -60.9 NC_006273.1 + 114260 0.69 0.62296
Target:  5'- uGCAGcGCGGGCCUCaGuacagcgagcacCCCACCUUCa -3'
miRNA:   3'- -CGUUuUGCCCGGGGcC------------GGGUGGAGGc -5'
30207 5' -60.9 NC_006273.1 + 161641 0.7 0.594314
Target:  5'- cGCugc-CGGGCCUCGGCCgcCGCCgCCa -3'
miRNA:   3'- -CGuuuuGCCCGGGGCCGG--GUGGaGGc -5'
30207 5' -60.9 NC_006273.1 + 140993 0.75 0.345759
Target:  5'- cCGGAGCGGGCcgcgcccggugCCCGGCCCacgGCC-CCGg -3'
miRNA:   3'- cGUUUUGCCCG-----------GGGCCGGG---UGGaGGC- -5'
30207 5' -60.9 NC_006273.1 + 191930 0.69 0.641142
Target:  5'- aCAAgucAGCGGcGCCCgGGUgaaaaccgcguauCCGCCUCCGc -3'
miRNA:   3'- cGUU---UUGCC-CGGGgCCG-------------GGUGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 1069 0.73 0.439951
Target:  5'- gGUAGAaccccGCGGGCCgCCgGGCgCC-CCUCCGa -3'
miRNA:   3'- -CGUUU-----UGCCCGG-GG-CCG-GGuGGAGGC- -5'
30207 5' -60.9 NC_006273.1 + 92567 0.7 0.584806
Target:  5'- aGCAGAccGCGGuGCacgCCCGuGCCCACCagCGa -3'
miRNA:   3'- -CGUUU--UGCC-CG---GGGC-CGGGUGGagGC- -5'
30207 5' -60.9 NC_006273.1 + 165638 0.69 0.642099
Target:  5'- cGCAGcACGGuGCCgCGGCCCgguCUCUGu -3'
miRNA:   3'- -CGUUuUGCC-CGGgGCCGGGug-GAGGC- -5'
30207 5' -60.9 NC_006273.1 + 206457 0.68 0.684029
Target:  5'- gGCAAcGCGuGGCCCUGGUCUggcccaaagaccgcuGCCUCg- -3'
miRNA:   3'- -CGUUuUGC-CCGGGGCCGGG---------------UGGAGgc -5'
30207 5' -60.9 NC_006273.1 + 197204 0.73 0.448443
Target:  5'- cGCGGcGCGGGCUCgGcGuCCCGCCgUCCGa -3'
miRNA:   3'- -CGUUuUGCCCGGGgC-C-GGGUGG-AGGC- -5'
30207 5' -60.9 NC_006273.1 + 205219 0.71 0.528567
Target:  5'- uGCG--ACGGGCCCCcgGGCUCGCCcaCUGa -3'
miRNA:   3'- -CGUuuUGCCCGGGG--CCGGGUGGa-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.