miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
30208	5'	-47.6	NC_006273.1	+	235023	0.69	0.998732
	Target:  5'- cGCG-GGCGUGUGCCgggugugucggCGggGUGUGUc -3' miRNA:   3'- -CGCuCUGUACAUGGa----------GCuaUACACAu -5'
30208	5'	-47.6	NC_006273.1	+	192	0.69	0.998732
	Target:  5'- cGCG-GGCGUGUGCCgggugugucggCGggGUGUGUc -3' miRNA:   3'- -CGCuCUGUACAUGGa----------GCuaUACACAu -5'
30208	5'	-47.6	NC_006273.1	+	195085	0.69	0.998732
	Target:  5'- cGCG-GGCGUGUGCCgggugugucggCGggGUGUGUc -3' miRNA:   3'- -CGCuCUGUACAUGGa----------GCuaUACACAu -5'
30208	5'	-47.6	NC_006273.1	+	234978	0.72	0.989706
	Target:  5'- cGCG-GGCGUGUGCCgggugugUCGggGUGUGUu -3' miRNA:   3'- -CGCuCUGUACAUGG-------AGCuaUACACAu -5'
30208	5'	-47.6	NC_006273.1	+	234933	0.72	0.989706
	Target:  5'- cGCG-GGCGUGUGCCgggugugUCGggGUGUGUu -3' miRNA:   3'- -CGCuCUGUACAUGG-------AGCuaUACACAu -5'
30208	5'	-47.6	NC_006273.1	+	147	0.72	0.989706
	Target:  5'- cGCG-GGCGUGUGCCgggugugUCGggGUGUGUu -3' miRNA:   3'- -CGCuCUGUACAUGG-------AGCuaUACACAu -5'
30208	5'	-47.6	NC_006273.1	+	102	0.72	0.989706
	Target:  5'- cGCG-GGCGUGUGCCgggugugUCGggGUGUGUu -3' miRNA:   3'- -CGCuCUGUACAUGG-------AGCuaUACACAu -5'
30208	5'	-47.6	NC_006273.1	+	195040	0.72	0.989706
	Target:  5'- cGCG-GGCGUGUGCCgggugugUCGggGUGUGUu -3' miRNA:   3'- -CGCuCUGUACAUGG-------AGCuaUACACAu -5'
30208	5'	-47.6	NC_006273.1	+	194995	0.72	0.989706
	Target:  5'- cGCG-GGCGUGUGCCgggugugUCGggGUGUGUu -3' miRNA:   3'- -CGCuCUGUACAUGG-------AGCuaUACACAu -5'
30208	5'	-47.6	NC_006273.1	+	198209	1.1	0.02631
	Target:  5'- uGCGAGACAUGUACCUCGAUAUGUGUAc -3' miRNA:   3'- -CGCUCUGUACAUGGAGCUAUACACAU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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