miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30209 3' -55.4 NC_006273.1 + 197394 0.66 0.97897
Target:  5'- gCGCCG-CGCUGuGGGCgCGcgagccGCACGGGc -3'
miRNA:   3'- -GCGGCaGUGAUuCCUG-GC------UGUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 117346 0.66 0.97897
Target:  5'- cCGCCGUCGCUuucucccucGGAgCCGGCA--GAGg -3'
miRNA:   3'- -GCGGCAGUGAuu-------CCU-GGCUGUgcCUC- -5'
30209 3' -55.4 NC_006273.1 + 215900 0.66 0.97897
Target:  5'- cCGCCG-CGCca---GCUGGCACGGAGu -3'
miRNA:   3'- -GCGGCaGUGauuccUGGCUGUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 2501 0.66 0.97897
Target:  5'- gCGCCG-CGCUGuGGGCgCGcgagccGCACGGGc -3'
miRNA:   3'- -GCGGCaGUGAUuCCUG-GC------UGUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 40742 0.66 0.978752
Target:  5'- aCGCCGagGCUGAcGGcugucgaGCCGAagaaGCGGAa -3'
miRNA:   3'- -GCGGCagUGAUU-CC-------UGGCUg---UGCCUc -5'
30209 3' -55.4 NC_006273.1 + 95840 0.66 0.976706
Target:  5'- uGCCGUU-CUGAGcuCCGACAUGGcGGa -3'
miRNA:   3'- gCGGCAGuGAUUCcuGGCUGUGCC-UC- -5'
30209 3' -55.4 NC_006273.1 + 204499 0.66 0.97647
Target:  5'- uCGCUGUCGCagAAGGAaaacucaucgcccUCGGCAgCGGAc -3'
miRNA:   3'- -GCGGCAGUGa-UUCCU-------------GGCUGU-GCCUc -5'
30209 3' -55.4 NC_006273.1 + 195266 0.66 0.974268
Target:  5'- uGCCGUCccCUGGGGACUcaaacaGACACaGAc -3'
miRNA:   3'- gCGGCAGu-GAUUCCUGG------CUGUGcCUc -5'
30209 3' -55.4 NC_006273.1 + 99178 0.66 0.974268
Target:  5'- gGCCGUCAUUAAcGGAaaCCGuguAUGGGGu -3'
miRNA:   3'- gCGGCAGUGAUU-CCU--GGCug-UGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 203119 0.66 0.974268
Target:  5'- cCGCuCGUCGCguUGAGGAUagucgcgcggUGGCAgCGGGGg -3'
miRNA:   3'- -GCG-GCAGUG--AUUCCUG----------GCUGU-GCCUC- -5'
30209 3' -55.4 NC_006273.1 + 235204 0.66 0.974268
Target:  5'- uGCCGUCccCUGGGGACUcaaacaGACACaGAc -3'
miRNA:   3'- gCGGCAGu-GAUUCCUGG------CUGUGcCUc -5'
30209 3' -55.4 NC_006273.1 + 373 0.66 0.974268
Target:  5'- uGCCGUCccCUGGGGACUcaaacaGACACaGAc -3'
miRNA:   3'- gCGGCAGu-GAUUCCUGG------CUGUGcCUc -5'
30209 3' -55.4 NC_006273.1 + 112209 0.66 0.973501
Target:  5'- gGCgGUUGCUgGAGGACgCGGCgguggcaaugcgcgGCGGGGg -3'
miRNA:   3'- gCGgCAGUGA-UUCCUG-GCUG--------------UGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 61548 0.66 0.972718
Target:  5'- gCGCCGUCACUAGuucauuguccucgucGG-CCGggucGCGCGGc- -3'
miRNA:   3'- -GCGGCAGUGAUU---------------CCuGGC----UGUGCCuc -5'
30209 3' -55.4 NC_006273.1 + 234506 0.66 0.971649
Target:  5'- uGCCGUUGCgcuGGGCCauGGcCGCGGAc -3'
miRNA:   3'- gCGGCAGUGauuCCUGG--CU-GUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 110539 0.66 0.971649
Target:  5'- uGCCGcCGCUcuuccacGGACCGcugGCGCGcGAGa -3'
miRNA:   3'- gCGGCaGUGAuu-----CCUGGC---UGUGC-CUC- -5'
30209 3' -55.4 NC_006273.1 + 83651 0.66 0.971649
Target:  5'- gGCCGUgCGC-AAGGcGCgCGACGCGGc- -3'
miRNA:   3'- gCGGCA-GUGaUUCC-UG-GCUGUGCCuc -5'
30209 3' -55.4 NC_006273.1 + 73148 0.66 0.971649
Target:  5'- cCGCUGcCACccaacGAGGACacgcaGACGgCGGAGg -3'
miRNA:   3'- -GCGGCaGUGa----UUCCUGg----CUGU-GCCUC- -5'
30209 3' -55.4 NC_006273.1 + 21530 0.66 0.971649
Target:  5'- uCGCCGgcgggCGCUggcguuucGAGGACggCGGCGCGGc- -3'
miRNA:   3'- -GCGGCa----GUGA--------UUCCUG--GCUGUGCCuc -5'
30209 3' -55.4 NC_006273.1 + 213558 0.66 0.969705
Target:  5'- gCGCCGUaGCgcagacagagacAGGACCGACGguagccacagccgcCGGAGa -3'
miRNA:   3'- -GCGGCAgUGau----------UCCUGGCUGU--------------GCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.