miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30209 3' -55.4 NC_006273.1 + 78956 0.66 0.968843
Target:  5'- aCGCCGUCgACU---GACCcACGCGGGa -3'
miRNA:   3'- -GCGGCAG-UGAuucCUGGcUGUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 203119 0.66 0.974268
Target:  5'- cCGCuCGUCGCguUGAGGAUagucgcgcggUGGCAgCGGGGg -3'
miRNA:   3'- -GCG-GCAGUG--AUUCCUG----------GCUGU-GCCUC- -5'
30209 3' -55.4 NC_006273.1 + 73148 0.66 0.971649
Target:  5'- cCGCUGcCACccaacGAGGACacgcaGACGgCGGAGg -3'
miRNA:   3'- -GCGGCaGUGa----UUCCUGg----CUGU-GCCUC- -5'
30209 3' -55.4 NC_006273.1 + 197394 0.66 0.97897
Target:  5'- gCGCCG-CGCUGuGGGCgCGcgagccGCACGGGc -3'
miRNA:   3'- -GCGGCaGUGAUuCCUG-GC------UGUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 135639 0.66 0.968843
Target:  5'- aGCaGUCAagauCUGGuacgagccacGGAUCGACACGGGGa -3'
miRNA:   3'- gCGgCAGU----GAUU----------CCUGGCUGUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 83651 0.66 0.971649
Target:  5'- gGCCGUgCGC-AAGGcGCgCGACGCGGc- -3'
miRNA:   3'- gCGGCA-GUGaUUCC-UG-GCUGUGCCuc -5'
30209 3' -55.4 NC_006273.1 + 41035 0.67 0.95565
Target:  5'- aCGgCGUCgACUGcucGGGcguCUGACugGGAGg -3'
miRNA:   3'- -GCgGCAG-UGAU---UCCu--GGCUGugCCUC- -5'
30209 3' -55.4 NC_006273.1 + 94197 0.67 0.962651
Target:  5'- uGCUGUCGCUcAAGG-UCGACGCGc-- -3'
miRNA:   3'- gCGGCAGUGA-UUCCuGGCUGUGCcuc -5'
30209 3' -55.4 NC_006273.1 + 84136 0.67 0.959254
Target:  5'- gCGCCGcuugaUCACggcagacGAGGAgCGGCGCGGc- -3'
miRNA:   3'- -GCGGC-----AGUGa------UUCCUgGCUGUGCCuc -5'
30209 3' -55.4 NC_006273.1 + 218184 0.67 0.947807
Target:  5'- uCGUCGUCGCguggcauGGGcggcgGCCGACgGCGGAc -3'
miRNA:   3'- -GCGGCAGUGau-----UCC-----UGGCUG-UGCCUc -5'
30209 3' -55.4 NC_006273.1 + 177155 0.67 0.959254
Target:  5'- aCGCCGUCAgUGuGGGCUucGCGCGGc- -3'
miRNA:   3'- -GCGGCAGUgAUuCCUGGc-UGUGCCuc -5'
30209 3' -55.4 NC_006273.1 + 140183 0.67 0.947807
Target:  5'- gCGCCGaCcccgGCUGGGcGGCCGAUggGGGGa -3'
miRNA:   3'- -GCGGCaG----UGAUUC-CUGGCUGugCCUC- -5'
30209 3' -55.4 NC_006273.1 + 50098 0.67 0.95565
Target:  5'- aCGCCGgcccgacguUUGAGcGGCCGACacACGGAGc -3'
miRNA:   3'- -GCGGCagu------GAUUC-CUGGCUG--UGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 198101 0.67 0.962651
Target:  5'- gGCCGUCGC-AAGGGCUG-CuCGGcGg -3'
miRNA:   3'- gCGGCAGUGaUUCCUGGCuGuGCCuC- -5'
30209 3' -55.4 NC_006273.1 + 185405 0.67 0.947807
Target:  5'- uCGCCGUCGC----GGCCGACGUGGuGg -3'
miRNA:   3'- -GCGGCAGUGauucCUGGCUGUGCCuC- -5'
30209 3' -55.4 NC_006273.1 + 147922 0.67 0.962651
Target:  5'- gGCCGUgACUAcGGACgccgaugagcguCGGCGCGGc- -3'
miRNA:   3'- gCGGCAgUGAUuCCUG------------GCUGUGCCuc -5'
30209 3' -55.4 NC_006273.1 + 167688 0.67 0.951835
Target:  5'- uCGUCGUCAC--GGGG-CGGCGCGaGGGa -3'
miRNA:   3'- -GCGGCAGUGauUCCUgGCUGUGC-CUC- -5'
30209 3' -55.4 NC_006273.1 + 14479 0.67 0.959254
Target:  5'- uGCUGUUACgacaucACCGAgGCGGAGa -3'
miRNA:   3'- gCGGCAGUGauucc-UGGCUgUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 22702 0.67 0.959254
Target:  5'- aGCgCG-CACaAAGGACCGucaggcgccgGCAUGGAGc -3'
miRNA:   3'- gCG-GCaGUGaUUCCUGGC----------UGUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 204385 0.67 0.95565
Target:  5'- uGCCGUagGCUcucGGGGCCGuauCGGAGa -3'
miRNA:   3'- gCGGCAg-UGAu--UCCUGGCuguGCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.