Results 1 - 20 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30209 | 3' | -55.4 | NC_006273.1 | + | 198475 | 1.09 | 0.005665 |
Target: 5'- uCGCCGUCACUAAGGACCGACACGGAGg -3' miRNA: 3'- -GCGGCAGUGAUUCCUGGCUGUGCCUC- -5' |
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30209 | 3' | -55.4 | NC_006273.1 | + | 180327 | 0.82 | 0.285258 |
Target: 5'- uCGCCGUCACUGcc-ACCGACAUGGAGc -3' miRNA: 3'- -GCGGCAGUGAUuccUGGCUGUGCCUC- -5' |
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30209 | 3' | -55.4 | NC_006273.1 | + | 26124 | 0.78 | 0.45453 |
Target: 5'- cCGCCGggCGCUGcGGucCCGACAUGGAGa -3' miRNA: 3'- -GCGGCa-GUGAUuCCu-GGCUGUGCCUC- -5' |
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30209 | 3' | -55.4 | NC_006273.1 | + | 47871 | 0.74 | 0.66509 |
Target: 5'- uCGCCGUC-CUGu-GACCGACGCGGc- -3' miRNA: 3'- -GCGGCAGuGAUucCUGGCUGUGCCuc -5' |
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30209 | 3' | -55.4 | NC_006273.1 | + | 196841 | 0.73 | 0.704138 |
Target: 5'- gCGCgGUgGCUGgguugcgcggcGGGGCCGGCgACGGGGa -3' miRNA: 3'- -GCGgCAgUGAU-----------UCCUGGCUG-UGCCUC- -5' |
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30209 | 3' | -55.4 | NC_006273.1 | + | 1949 | 0.73 | 0.704138 |
Target: 5'- gCGCgGUgGCUGgguugcgcggcGGGGCCGGCgACGGGGa -3' miRNA: 3'- -GCGgCAgUGAU-----------UCCUGGCUG-UGCCUC- -5' |
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30209 | 3' | -55.4 | NC_006273.1 | + | 56138 | 0.73 | 0.732857 |
Target: 5'- gGCCG-CGgaGgcGGcGACCGACGCGGAGg -3' miRNA: 3'- gCGGCaGUgaU--UC-CUGGCUGUGCCUC- -5' |
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30209 | 3' | -55.4 | NC_006273.1 | + | 194706 | 0.72 | 0.778987 |
Target: 5'- aCGCCGcaaacgCGCUGAGGacGCCGACGCGc-- -3' miRNA: 3'- -GCGGCa-----GUGAUUCC--UGGCUGUGCcuc -5' |
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30209 | 3' | -55.4 | NC_006273.1 | + | 234644 | 0.72 | 0.778987 |
Target: 5'- aCGCCGcaaacgCGCUGAGGacGCCGACGCGc-- -3' miRNA: 3'- -GCGGCa-----GUGAUUCC--UGGCUGUGCcuc -5' |
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30209 | 3' | -55.4 | NC_006273.1 | + | 56890 | 0.72 | 0.778987 |
Target: 5'- aGCCGUCAacCUGuuGGA-CGACACGGAc -3' miRNA: 3'- gCGGCAGU--GAUu-CCUgGCUGUGCCUc -5' |
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30209 | 3' | -55.4 | NC_006273.1 | + | 122935 | 0.72 | 0.79664 |
Target: 5'- aCGCCgGUCcCUGGGGACgacgaacgcggaCGACACGGuGg -3' miRNA: 3'- -GCGG-CAGuGAUUCCUG------------GCUGUGCCuC- -5' |
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30209 | 3' | -55.4 | NC_006273.1 | + | 120885 | 0.71 | 0.817087 |
Target: 5'- aCGCCGUCGCcGAGGAUgcugauuugcguuugCGGCccGCGGAa -3' miRNA: 3'- -GCGGCAGUGaUUCCUG---------------GCUG--UGCCUc -5' |
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30209 | 3' | -55.4 | NC_006273.1 | + | 211714 | 0.71 | 0.822062 |
Target: 5'- gGCCu---CUGGGGGCCG-CACGGAGc -3' miRNA: 3'- gCGGcaguGAUUCCUGGCuGUGCCUC- -5' |
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30209 | 3' | -55.4 | NC_006273.1 | + | 112454 | 0.7 | 0.861133 |
Target: 5'- uCGUCGUCcCcAGGGACCGGCGUGGcAGg -3' miRNA: 3'- -GCGGCAGuGaUUCCUGGCUGUGCC-UC- -5' |
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30209 | 3' | -55.4 | NC_006273.1 | + | 213016 | 0.7 | 0.861868 |
Target: 5'- uCGCCGaaccgcgucugguacCGCUAcugugggcgauGGGACCGACGuCGGAGu -3' miRNA: 3'- -GCGGCa--------------GUGAU-----------UCCUGGCUGU-GCCUC- -5' |
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30209 | 3' | -55.4 | NC_006273.1 | + | 197182 | 0.7 | 0.868394 |
Target: 5'- cCGCCGUCuccggaUGAGcGGCCGcgGCGCGGGc -3' miRNA: 3'- -GCGGCAGug----AUUC-CUGGC--UGUGCCUc -5' |
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30209 | 3' | -55.4 | NC_006273.1 | + | 77153 | 0.7 | 0.875457 |
Target: 5'- cCGCCGUCGCc---GGCCGACGCGc-- -3' miRNA: 3'- -GCGGCAGUGauucCUGGCUGUGCcuc -5' |
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30209 | 3' | -55.4 | NC_006273.1 | + | 204586 | 0.7 | 0.875457 |
Target: 5'- aCGaCCGUCGCU--GGACCacGACAacCGGAGc -3' miRNA: 3'- -GC-GGCAGUGAuuCCUGG--CUGU--GCCUC- -5' |
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30209 | 3' | -55.4 | NC_006273.1 | + | 13284 | 0.7 | 0.875457 |
Target: 5'- aGCCG-UACUGAGcGugCGAgGCGGGu -3' miRNA: 3'- gCGGCaGUGAUUC-CugGCUgUGCCUc -5' |
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30209 | 3' | -55.4 | NC_006273.1 | + | 14496 | 0.7 | 0.878226 |
Target: 5'- aCGCUGUCugUccuuggguccccccAAGGGCUGGCaugugauguuacguACGGAGg -3' miRNA: 3'- -GCGGCAGugA--------------UUCCUGGCUG--------------UGCCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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