miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30209 3' -55.4 NC_006273.1 + 142804 0.69 0.888972
Target:  5'- cCGCCGUCGCU--GG-UgGGCACGGGc -3'
miRNA:   3'- -GCGGCAGUGAuuCCuGgCUGUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 73859 0.69 0.888972
Target:  5'- cCGCCGuUCGCgUGAGcgcGGCCGACAUGcGGGc -3'
miRNA:   3'- -GCGGC-AGUG-AUUC---CUGGCUGUGC-CUC- -5'
30209 3' -55.4 NC_006273.1 + 31760 0.69 0.895416
Target:  5'- gGCCGUCGCggacgaaaguGGGGCCGucuGCAcgcccCGGAGu -3'
miRNA:   3'- gCGGCAGUGau--------UCCUGGC---UGU-----GCCUC- -5'
30209 3' -55.4 NC_006273.1 + 73105 0.69 0.907659
Target:  5'- uCGCCGUUGCUGuuccuccgcagaAGGGCCGuCGCGa-- -3'
miRNA:   3'- -GCGGCAGUGAU------------UCCUGGCuGUGCcuc -5'
30209 3' -55.4 NC_006273.1 + 119089 0.69 0.907659
Target:  5'- cCGCCGUCcCgcGGGuCCG-CACGGGc -3'
miRNA:   3'- -GCGGCAGuGauUCCuGGCuGUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 185826 0.69 0.907659
Target:  5'- uCGUCGUCGCUuuGGGAacgaCGugAUGGAc -3'
miRNA:   3'- -GCGGCAGUGAu-UCCUg---GCugUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 61204 0.69 0.913453
Target:  5'- uGCCG-CAC-AAGG-CCGugGCGGuAGg -3'
miRNA:   3'- gCGGCaGUGaUUCCuGGCugUGCC-UC- -5'
30209 3' -55.4 NC_006273.1 + 151257 0.68 0.924378
Target:  5'- uGCCGUgAUcAAGcGGCgCGGCGCGGAc -3'
miRNA:   3'- gCGGCAgUGaUUC-CUG-GCUGUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 101649 0.68 0.924378
Target:  5'- cCGCCGUCGCUAggaAGGucacguuCUGGCACGc-- -3'
miRNA:   3'- -GCGGCAGUGAU---UCCu------GGCUGUGCcuc -5'
30209 3' -55.4 NC_006273.1 + 103100 0.68 0.924378
Target:  5'- uGCCGUCaacGCUGacggagguuGGGACagaaGGgACGGAGg -3'
miRNA:   3'- gCGGCAG---UGAU---------UCCUGg---CUgUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 130629 0.68 0.929507
Target:  5'- aCGCCuuagcGUCACguuu-GCCGACACGGAc -3'
miRNA:   3'- -GCGG-----CAGUGauuccUGGCUGUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 117999 0.68 0.929507
Target:  5'- cCGCag-CACUcagAGGGugCGACAUGGAc -3'
miRNA:   3'- -GCGgcaGUGA---UUCCugGCUGUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 13331 0.68 0.934414
Target:  5'- gCGUCGUCAUcuucgacuaUAAGGAUCGugACcGAGu -3'
miRNA:   3'- -GCGGCAGUG---------AUUCCUGGCugUGcCUC- -5'
30209 3' -55.4 NC_006273.1 + 90359 0.68 0.934414
Target:  5'- cCGCCGgCGCUGGGaugccgcGCCGACGacUGGAGa -3'
miRNA:   3'- -GCGGCaGUGAUUCc------UGGCUGU--GCCUC- -5'
30209 3' -55.4 NC_006273.1 + 109534 0.68 0.936314
Target:  5'- gGCCGUCGauccgua-CGACACGGAGg -3'
miRNA:   3'- gCGGCAGUgauuccugGCUGUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 79808 0.68 0.939098
Target:  5'- aCGCCGcCACUAcugccGGAgCCGACGCuGAa -3'
miRNA:   3'- -GCGGCaGUGAUu----CCU-GGCUGUGcCUc -5'
30209 3' -55.4 NC_006273.1 + 208880 0.68 0.939098
Target:  5'- gGCCGUUGCUGGGGuguCUGugGuCGGuGa -3'
miRNA:   3'- gCGGCAGUGAUUCCu--GGCugU-GCCuC- -5'
30209 3' -55.4 NC_006273.1 + 1988 0.68 0.939098
Target:  5'- aCGaCGUCGCgccagcGGcGAgCGGCACGGAGa -3'
miRNA:   3'- -GCgGCAGUGau----UC-CUgGCUGUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 233300 0.68 0.939098
Target:  5'- aGCCGUagCAUguGGGugCGAUGCGGuGg -3'
miRNA:   3'- gCGGCA--GUGauUCCugGCUGUGCCuC- -5'
30209 3' -55.4 NC_006273.1 + 196886 0.67 0.947807
Target:  5'- uCGCCGcCAgc-GGcGAgCGGCACGGAGa -3'
miRNA:   3'- -GCGGCaGUgauUC-CUgGCUGUGCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.