miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30209 3' -55.4 NC_006273.1 + 78956 0.66 0.968843
Target:  5'- aCGCCGUCgACU---GACCcACGCGGGa -3'
miRNA:   3'- -GCGGCAG-UGAuucCUGGcUGUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 135639 0.66 0.968843
Target:  5'- aGCaGUCAagauCUGGuacgagccacGGAUCGACACGGGGa -3'
miRNA:   3'- gCGgCAGU----GAUU----------CCUGGCUGUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 118607 0.66 0.968843
Target:  5'- aCGUCGUCGC--AGcGCCGGCugGaGAGc -3'
miRNA:   3'- -GCGGCAGUGauUCcUGGCUGugC-CUC- -5'
30209 3' -55.4 NC_006273.1 + 43117 0.66 0.965846
Target:  5'- aCGCCG-CACUGcaGACCG-UACGGGu -3'
miRNA:   3'- -GCGGCaGUGAUucCUGGCuGUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 143341 0.66 0.965846
Target:  5'- uGCC-UCAUgcggcuguuGGACCGGCGCGGu- -3'
miRNA:   3'- gCGGcAGUGauu------CCUGGCUGUGCCuc -5'
30209 3' -55.4 NC_006273.1 + 84862 0.66 0.965846
Target:  5'- gGCCGUCAgggugGAGGGCUuGGcCACGGGa -3'
miRNA:   3'- gCGGCAGUga---UUCCUGG-CU-GUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 37328 0.67 0.962651
Target:  5'- uGCCGUUGCUuuGG--CGGCAgCGGAGg -3'
miRNA:   3'- gCGGCAGUGAuuCCugGCUGU-GCCUC- -5'
30209 3' -55.4 NC_006273.1 + 147922 0.67 0.962651
Target:  5'- gGCCGUgACUAcGGACgccgaugagcguCGGCGCGGc- -3'
miRNA:   3'- gCGGCAgUGAUuCCUG------------GCUGUGCCuc -5'
30209 3' -55.4 NC_006273.1 + 94197 0.67 0.962651
Target:  5'- uGCUGUCGCUcAAGG-UCGACGCGc-- -3'
miRNA:   3'- gCGGCAGUGA-UUCCuGGCUGUGCcuc -5'
30209 3' -55.4 NC_006273.1 + 198101 0.67 0.962651
Target:  5'- gGCCGUCGC-AAGGGCUG-CuCGGcGg -3'
miRNA:   3'- gCGGCAGUGaUUCCUGGCuGuGCCuC- -5'
30209 3' -55.4 NC_006273.1 + 84136 0.67 0.959254
Target:  5'- gCGCCGcuugaUCACggcagacGAGGAgCGGCGCGGc- -3'
miRNA:   3'- -GCGGC-----AGUGa------UUCCUgGCUGUGCCuc -5'
30209 3' -55.4 NC_006273.1 + 84424 0.67 0.959254
Target:  5'- aCGCCGUCACgcAGGugaGGCucuCGGAu -3'
miRNA:   3'- -GCGGCAGUGauUCCuggCUGu--GCCUc -5'
30209 3' -55.4 NC_006273.1 + 114332 0.67 0.959254
Target:  5'- -aCCGaCACaccuGGGACCGGCACGacGAGg -3'
miRNA:   3'- gcGGCaGUGau--UCCUGGCUGUGC--CUC- -5'
30209 3' -55.4 NC_006273.1 + 177155 0.67 0.959254
Target:  5'- aCGCCGUCAgUGuGGGCUucGCGCGGc- -3'
miRNA:   3'- -GCGGCAGUgAUuCCUGGc-UGUGCCuc -5'
30209 3' -55.4 NC_006273.1 + 22702 0.67 0.959254
Target:  5'- aGCgCG-CACaAAGGACCGucaggcgccgGCAUGGAGc -3'
miRNA:   3'- gCG-GCaGUGaUUCCUGGC----------UGUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 190362 0.67 0.959254
Target:  5'- gGCCGcCGCcgUGGGGGCC---GCGGAGg -3'
miRNA:   3'- gCGGCaGUG--AUUCCUGGcugUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 156797 0.67 0.959254
Target:  5'- uGCCGUCAUUAAGcGAUUGGCGgcccguucugaGGAGc -3'
miRNA:   3'- gCGGCAGUGAUUC-CUGGCUGUg----------CCUC- -5'
30209 3' -55.4 NC_006273.1 + 195153 0.67 0.959254
Target:  5'- gGCCG-CAaccGGGuucuGCCGGCAUGGGGg -3'
miRNA:   3'- gCGGCaGUgauUCC----UGGCUGUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 192647 0.67 0.959254
Target:  5'- uCGCCGUCGCUAugcGGcucgucGCCGugugGCGCGGc- -3'
miRNA:   3'- -GCGGCAGUGAUu--CC------UGGC----UGUGCCuc -5'
30209 3' -55.4 NC_006273.1 + 14479 0.67 0.959254
Target:  5'- uGCUGUUACgacaucACCGAgGCGGAGa -3'
miRNA:   3'- gCGGCAGUGauucc-UGGCUgUGCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.