miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30209 3' -55.4 NC_006273.1 + 41035 0.67 0.95565
Target:  5'- aCGgCGUCgACUGcucGGGcguCUGACugGGAGg -3'
miRNA:   3'- -GCgGCAG-UGAU---UCCu--GGCUGugCCUC- -5'
30209 3' -55.4 NC_006273.1 + 204385 0.67 0.95565
Target:  5'- uGCCGUagGCUcucGGGGCCGuauCGGAGa -3'
miRNA:   3'- gCGGCAg-UGAu--UCCUGGCuguGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 50098 0.67 0.95565
Target:  5'- aCGCCGgcccgacguUUGAGcGGCCGACacACGGAGc -3'
miRNA:   3'- -GCGGCagu------GAUUC-CUGGCUG--UGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 167688 0.67 0.951835
Target:  5'- uCGUCGUCAC--GGGG-CGGCGCGaGGGa -3'
miRNA:   3'- -GCGGCAGUGauUCCUgGCUGUGC-CUC- -5'
30209 3' -55.4 NC_006273.1 + 8232 0.67 0.951835
Target:  5'- uGCCGgu----GGGGCCGGgACGGGGu -3'
miRNA:   3'- gCGGCagugauUCCUGGCUgUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 189512 0.67 0.951442
Target:  5'- cCGCCG-CGCUGugugagaguuccaGGGccGCCGACACcGAGu -3'
miRNA:   3'- -GCGGCaGUGAU-------------UCC--UGGCUGUGcCUC- -5'
30209 3' -55.4 NC_006273.1 + 140183 0.67 0.947807
Target:  5'- gCGCCGaCcccgGCUGGGcGGCCGAUggGGGGa -3'
miRNA:   3'- -GCGGCaG----UGAUUC-CUGGCUGugCCUC- -5'
30209 3' -55.4 NC_006273.1 + 218184 0.67 0.947807
Target:  5'- uCGUCGUCGCguggcauGGGcggcgGCCGACgGCGGAc -3'
miRNA:   3'- -GCGGCAGUGau-----UCC-----UGGCUG-UGCCUc -5'
30209 3' -55.4 NC_006273.1 + 185405 0.67 0.947807
Target:  5'- uCGCCGUCGC----GGCCGACGUGGuGg -3'
miRNA:   3'- -GCGGCAGUGauucCUGGCUGUGCCuC- -5'
30209 3' -55.4 NC_006273.1 + 196886 0.67 0.947807
Target:  5'- uCGCCGcCAgc-GGcGAgCGGCACGGAGa -3'
miRNA:   3'- -GCGGCaGUgauUC-CUgGCUGUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 1988 0.68 0.939098
Target:  5'- aCGaCGUCGCgccagcGGcGAgCGGCACGGAGa -3'
miRNA:   3'- -GCgGCAGUGau----UC-CUgGCUGUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 233300 0.68 0.939098
Target:  5'- aGCCGUagCAUguGGGugCGAUGCGGuGg -3'
miRNA:   3'- gCGGCA--GUGauUCCugGCUGUGCCuC- -5'
30209 3' -55.4 NC_006273.1 + 208880 0.68 0.939098
Target:  5'- gGCCGUUGCUGGGGuguCUGugGuCGGuGa -3'
miRNA:   3'- gCGGCAGUGAUUCCu--GGCugU-GCCuC- -5'
30209 3' -55.4 NC_006273.1 + 79808 0.68 0.939098
Target:  5'- aCGCCGcCACUAcugccGGAgCCGACGCuGAa -3'
miRNA:   3'- -GCGGCaGUGAUu----CCU-GGCUGUGcCUc -5'
30209 3' -55.4 NC_006273.1 + 109534 0.68 0.936314
Target:  5'- gGCCGUCGauccgua-CGACACGGAGg -3'
miRNA:   3'- gCGGCAGUgauuccugGCUGUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 90359 0.68 0.934414
Target:  5'- cCGCCGgCGCUGGGaugccgcGCCGACGacUGGAGa -3'
miRNA:   3'- -GCGGCaGUGAUUCc------UGGCUGU--GCCUC- -5'
30209 3' -55.4 NC_006273.1 + 13331 0.68 0.934414
Target:  5'- gCGUCGUCAUcuucgacuaUAAGGAUCGugACcGAGu -3'
miRNA:   3'- -GCGGCAGUG---------AUUCCUGGCugUGcCUC- -5'
30209 3' -55.4 NC_006273.1 + 130629 0.68 0.929507
Target:  5'- aCGCCuuagcGUCACguuu-GCCGACACGGAc -3'
miRNA:   3'- -GCGG-----CAGUGauuccUGGCUGUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 117999 0.68 0.929507
Target:  5'- cCGCag-CACUcagAGGGugCGACAUGGAc -3'
miRNA:   3'- -GCGgcaGUGA---UUCCugGCUGUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 103100 0.68 0.924378
Target:  5'- uGCCGUCaacGCUGacggagguuGGGACagaaGGgACGGAGg -3'
miRNA:   3'- gCGGCAG---UGAU---------UCCUGg---CUgUGCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.