miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30209 3' -55.4 NC_006273.1 + 373 0.66 0.974268
Target:  5'- uGCCGUCccCUGGGGACUcaaacaGACACaGAc -3'
miRNA:   3'- gCGGCAGu-GAUUCCUGG------CUGUGcCUc -5'
30209 3' -55.4 NC_006273.1 + 1949 0.73 0.704138
Target:  5'- gCGCgGUgGCUGgguugcgcggcGGGGCCGGCgACGGGGa -3'
miRNA:   3'- -GCGgCAgUGAU-----------UCCUGGCUG-UGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 1988 0.68 0.939098
Target:  5'- aCGaCGUCGCgccagcGGcGAgCGGCACGGAGa -3'
miRNA:   3'- -GCgGCAGUGau----UC-CUgGCUGUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 2501 0.66 0.97897
Target:  5'- gCGCCG-CGCUGuGGGCgCGcgagccGCACGGGc -3'
miRNA:   3'- -GCGGCaGUGAUuCCUG-GC------UGUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 8232 0.67 0.951835
Target:  5'- uGCCGgu----GGGGCCGGgACGGGGu -3'
miRNA:   3'- gCGGCagugauUCCUGGCUgUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 13284 0.7 0.875457
Target:  5'- aGCCG-UACUGAGcGugCGAgGCGGGu -3'
miRNA:   3'- gCGGCaGUGAUUC-CugGCUgUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 13331 0.68 0.934414
Target:  5'- gCGUCGUCAUcuucgacuaUAAGGAUCGugACcGAGu -3'
miRNA:   3'- -GCGGCAGUG---------AUUCCUGGCugUGcCUC- -5'
30209 3' -55.4 NC_006273.1 + 14479 0.67 0.959254
Target:  5'- uGCUGUUACgacaucACCGAgGCGGAGa -3'
miRNA:   3'- gCGGCAGUGauucc-UGGCUgUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 14496 0.7 0.878226
Target:  5'- aCGCUGUCugUccuuggguccccccAAGGGCUGGCaugugauguuacguACGGAGg -3'
miRNA:   3'- -GCGGCAGugA--------------UUCCUGGCUG--------------UGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 21530 0.66 0.971649
Target:  5'- uCGCCGgcgggCGCUggcguuucGAGGACggCGGCGCGGc- -3'
miRNA:   3'- -GCGGCa----GUGA--------UUCCUG--GCUGUGCCuc -5'
30209 3' -55.4 NC_006273.1 + 22702 0.67 0.959254
Target:  5'- aGCgCG-CACaAAGGACCGucaggcgccgGCAUGGAGc -3'
miRNA:   3'- gCG-GCaGUGaUUCCUGGC----------UGUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 26124 0.78 0.45453
Target:  5'- cCGCCGggCGCUGcGGucCCGACAUGGAGa -3'
miRNA:   3'- -GCGGCa-GUGAUuCCu-GGCUGUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 31760 0.69 0.895416
Target:  5'- gGCCGUCGCggacgaaaguGGGGCCGucuGCAcgcccCGGAGu -3'
miRNA:   3'- gCGGCAGUGau--------UCCUGGC---UGU-----GCCUC- -5'
30209 3' -55.4 NC_006273.1 + 37328 0.67 0.962651
Target:  5'- uGCCGUUGCUuuGG--CGGCAgCGGAGg -3'
miRNA:   3'- gCGGCAGUGAuuCCugGCUGU-GCCUC- -5'
30209 3' -55.4 NC_006273.1 + 40742 0.66 0.978752
Target:  5'- aCGCCGagGCUGAcGGcugucgaGCCGAagaaGCGGAa -3'
miRNA:   3'- -GCGGCagUGAUU-CC-------UGGCUg---UGCCUc -5'
30209 3' -55.4 NC_006273.1 + 41035 0.67 0.95565
Target:  5'- aCGgCGUCgACUGcucGGGcguCUGACugGGAGg -3'
miRNA:   3'- -GCgGCAG-UGAU---UCCu--GGCUGugCCUC- -5'
30209 3' -55.4 NC_006273.1 + 43117 0.66 0.965846
Target:  5'- aCGCCG-CACUGcaGACCG-UACGGGu -3'
miRNA:   3'- -GCGGCaGUGAUucCUGGCuGUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 47871 0.74 0.66509
Target:  5'- uCGCCGUC-CUGu-GACCGACGCGGc- -3'
miRNA:   3'- -GCGGCAGuGAUucCUGGCUGUGCCuc -5'
30209 3' -55.4 NC_006273.1 + 50098 0.67 0.95565
Target:  5'- aCGCCGgcccgacguUUGAGcGGCCGACacACGGAGc -3'
miRNA:   3'- -GCGGCagu------GAUUC-CUGGCUG--UGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 56138 0.73 0.732857
Target:  5'- gGCCG-CGgaGgcGGcGACCGACGCGGAGg -3'
miRNA:   3'- gCGGCaGUgaU--UC-CUGGCUGUGCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.