miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30209 3' -55.4 NC_006273.1 + 56890 0.72 0.778987
Target:  5'- aGCCGUCAacCUGuuGGA-CGACACGGAc -3'
miRNA:   3'- gCGGCAGU--GAUu-CCUgGCUGUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 61204 0.69 0.913453
Target:  5'- uGCCG-CAC-AAGG-CCGugGCGGuAGg -3'
miRNA:   3'- gCGGCaGUGaUUCCuGGCugUGCC-UC- -5'
30209 3' -55.4 NC_006273.1 + 61548 0.66 0.972718
Target:  5'- gCGCCGUCACUAGuucauuguccucgucGG-CCGggucGCGCGGc- -3'
miRNA:   3'- -GCGGCAGUGAUU---------------CCuGGC----UGUGCCuc -5'
30209 3' -55.4 NC_006273.1 + 73105 0.69 0.907659
Target:  5'- uCGCCGUUGCUGuuccuccgcagaAGGGCCGuCGCGa-- -3'
miRNA:   3'- -GCGGCAGUGAU------------UCCUGGCuGUGCcuc -5'
30209 3' -55.4 NC_006273.1 + 73148 0.66 0.971649
Target:  5'- cCGCUGcCACccaacGAGGACacgcaGACGgCGGAGg -3'
miRNA:   3'- -GCGGCaGUGa----UUCCUGg----CUGU-GCCUC- -5'
30209 3' -55.4 NC_006273.1 + 73859 0.69 0.888972
Target:  5'- cCGCCGuUCGCgUGAGcgcGGCCGACAUGcGGGc -3'
miRNA:   3'- -GCGGC-AGUG-AUUC---CUGGCUGUGC-CUC- -5'
30209 3' -55.4 NC_006273.1 + 77153 0.7 0.875457
Target:  5'- cCGCCGUCGCc---GGCCGACGCGc-- -3'
miRNA:   3'- -GCGGCAGUGauucCUGGCUGUGCcuc -5'
30209 3' -55.4 NC_006273.1 + 78956 0.66 0.968843
Target:  5'- aCGCCGUCgACU---GACCcACGCGGGa -3'
miRNA:   3'- -GCGGCAG-UGAuucCUGGcUGUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 79808 0.68 0.939098
Target:  5'- aCGCCGcCACUAcugccGGAgCCGACGCuGAa -3'
miRNA:   3'- -GCGGCaGUGAUu----CCU-GGCUGUGcCUc -5'
30209 3' -55.4 NC_006273.1 + 83651 0.66 0.971649
Target:  5'- gGCCGUgCGC-AAGGcGCgCGACGCGGc- -3'
miRNA:   3'- gCGGCA-GUGaUUCC-UG-GCUGUGCCuc -5'
30209 3' -55.4 NC_006273.1 + 84136 0.67 0.959254
Target:  5'- gCGCCGcuugaUCACggcagacGAGGAgCGGCGCGGc- -3'
miRNA:   3'- -GCGGC-----AGUGa------UUCCUgGCUGUGCCuc -5'
30209 3' -55.4 NC_006273.1 + 84424 0.67 0.959254
Target:  5'- aCGCCGUCACgcAGGugaGGCucuCGGAu -3'
miRNA:   3'- -GCGGCAGUGauUCCuggCUGu--GCCUc -5'
30209 3' -55.4 NC_006273.1 + 84862 0.66 0.965846
Target:  5'- gGCCGUCAgggugGAGGGCUuGGcCACGGGa -3'
miRNA:   3'- gCGGCAGUga---UUCCUGG-CU-GUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 90359 0.68 0.934414
Target:  5'- cCGCCGgCGCUGGGaugccgcGCCGACGacUGGAGa -3'
miRNA:   3'- -GCGGCaGUGAUUCc------UGGCUGU--GCCUC- -5'
30209 3' -55.4 NC_006273.1 + 94197 0.67 0.962651
Target:  5'- uGCUGUCGCUcAAGG-UCGACGCGc-- -3'
miRNA:   3'- gCGGCAGUGA-UUCCuGGCUGUGCcuc -5'
30209 3' -55.4 NC_006273.1 + 95840 0.66 0.976706
Target:  5'- uGCCGUU-CUGAGcuCCGACAUGGcGGa -3'
miRNA:   3'- gCGGCAGuGAUUCcuGGCUGUGCC-UC- -5'
30209 3' -55.4 NC_006273.1 + 99178 0.66 0.974268
Target:  5'- gGCCGUCAUUAAcGGAaaCCGuguAUGGGGu -3'
miRNA:   3'- gCGGCAGUGAUU-CCU--GGCug-UGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 101649 0.68 0.924378
Target:  5'- cCGCCGUCGCUAggaAGGucacguuCUGGCACGc-- -3'
miRNA:   3'- -GCGGCAGUGAU---UCCu------GGCUGUGCcuc -5'
30209 3' -55.4 NC_006273.1 + 103100 0.68 0.924378
Target:  5'- uGCCGUCaacGCUGacggagguuGGGACagaaGGgACGGAGg -3'
miRNA:   3'- gCGGCAG---UGAU---------UCCUGg---CUgUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 109534 0.68 0.936314
Target:  5'- gGCCGUCGauccgua-CGACACGGAGg -3'
miRNA:   3'- gCGGCAGUgauuccugGCUGUGCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.