miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30209 3' -55.4 NC_006273.1 + 235204 0.66 0.974268
Target:  5'- uGCCGUCccCUGGGGACUcaaacaGACACaGAc -3'
miRNA:   3'- gCGGCAGu-GAUUCCUGG------CUGUGcCUc -5'
30209 3' -55.4 NC_006273.1 + 234644 0.72 0.778987
Target:  5'- aCGCCGcaaacgCGCUGAGGacGCCGACGCGc-- -3'
miRNA:   3'- -GCGGCa-----GUGAUUCC--UGGCUGUGCcuc -5'
30209 3' -55.4 NC_006273.1 + 234506 0.66 0.971649
Target:  5'- uGCCGUUGCgcuGGGCCauGGcCGCGGAc -3'
miRNA:   3'- gCGGCAGUGauuCCUGG--CU-GUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 233300 0.68 0.939098
Target:  5'- aGCCGUagCAUguGGGugCGAUGCGGuGg -3'
miRNA:   3'- gCGGCA--GUGauUCCugGCUGUGCCuC- -5'
30209 3' -55.4 NC_006273.1 + 218184 0.67 0.947807
Target:  5'- uCGUCGUCGCguggcauGGGcggcgGCCGACgGCGGAc -3'
miRNA:   3'- -GCGGCAGUGau-----UCC-----UGGCUG-UGCCUc -5'
30209 3' -55.4 NC_006273.1 + 215900 0.66 0.97897
Target:  5'- cCGCCG-CGCca---GCUGGCACGGAGu -3'
miRNA:   3'- -GCGGCaGUGauuccUGGCUGUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 213558 0.66 0.969705
Target:  5'- gCGCCGUaGCgcagacagagacAGGACCGACGguagccacagccgcCGGAGa -3'
miRNA:   3'- -GCGGCAgUGau----------UCCUGGCUGU--------------GCCUC- -5'
30209 3' -55.4 NC_006273.1 + 213016 0.7 0.861868
Target:  5'- uCGCCGaaccgcgucugguacCGCUAcugugggcgauGGGACCGACGuCGGAGu -3'
miRNA:   3'- -GCGGCa--------------GUGAU-----------UCCUGGCUGU-GCCUC- -5'
30209 3' -55.4 NC_006273.1 + 211714 0.71 0.822062
Target:  5'- gGCCu---CUGGGGGCCG-CACGGAGc -3'
miRNA:   3'- gCGGcaguGAUUCCUGGCuGUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 208880 0.68 0.939098
Target:  5'- gGCCGUUGCUGGGGuguCUGugGuCGGuGa -3'
miRNA:   3'- gCGGCAGUGAUUCCu--GGCugU-GCCuC- -5'
30209 3' -55.4 NC_006273.1 + 204586 0.7 0.875457
Target:  5'- aCGaCCGUCGCU--GGACCacGACAacCGGAGc -3'
miRNA:   3'- -GC-GGCAGUGAuuCCUGG--CUGU--GCCUC- -5'
30209 3' -55.4 NC_006273.1 + 204499 0.66 0.97647
Target:  5'- uCGCUGUCGCagAAGGAaaacucaucgcccUCGGCAgCGGAc -3'
miRNA:   3'- -GCGGCAGUGa-UUCCU-------------GGCUGU-GCCUc -5'
30209 3' -55.4 NC_006273.1 + 204385 0.67 0.95565
Target:  5'- uGCCGUagGCUcucGGGGCCGuauCGGAGa -3'
miRNA:   3'- gCGGCAg-UGAu--UCCUGGCuguGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 203119 0.66 0.974268
Target:  5'- cCGCuCGUCGCguUGAGGAUagucgcgcggUGGCAgCGGGGg -3'
miRNA:   3'- -GCG-GCAGUG--AUUCCUG----------GCUGU-GCCUC- -5'
30209 3' -55.4 NC_006273.1 + 198475 1.09 0.005665
Target:  5'- uCGCCGUCACUAAGGACCGACACGGAGg -3'
miRNA:   3'- -GCGGCAGUGAUUCCUGGCUGUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 198101 0.67 0.962651
Target:  5'- gGCCGUCGC-AAGGGCUG-CuCGGcGg -3'
miRNA:   3'- gCGGCAGUGaUUCCUGGCuGuGCCuC- -5'
30209 3' -55.4 NC_006273.1 + 197394 0.66 0.97897
Target:  5'- gCGCCG-CGCUGuGGGCgCGcgagccGCACGGGc -3'
miRNA:   3'- -GCGGCaGUGAUuCCUG-GC------UGUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 197182 0.7 0.868394
Target:  5'- cCGCCGUCuccggaUGAGcGGCCGcgGCGCGGGc -3'
miRNA:   3'- -GCGGCAGug----AUUC-CUGGC--UGUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 196886 0.67 0.947807
Target:  5'- uCGCCGcCAgc-GGcGAgCGGCACGGAGa -3'
miRNA:   3'- -GCGGCaGUgauUC-CUgGCUGUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 196841 0.73 0.704138
Target:  5'- gCGCgGUgGCUGgguugcgcggcGGGGCCGGCgACGGGGa -3'
miRNA:   3'- -GCGgCAgUGAU-----------UCCUGGCUG-UGCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.