miRNA display CGI


Results 1 - 20 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30209 3' -55.4 NC_006273.1 + 196886 0.67 0.947807
Target:  5'- uCGCCGcCAgc-GGcGAgCGGCACGGAGa -3'
miRNA:   3'- -GCGGCaGUgauUC-CUgGCUGUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 185826 0.69 0.907659
Target:  5'- uCGUCGUCGCUuuGGGAacgaCGugAUGGAc -3'
miRNA:   3'- -GCGGCAGUGAu-UCCUg---GCugUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 101649 0.68 0.924378
Target:  5'- cCGCCGUCGCUAggaAGGucacguuCUGGCACGc-- -3'
miRNA:   3'- -GCGGCAGUGAU---UCCu------GGCUGUGCcuc -5'
30209 3' -55.4 NC_006273.1 + 151257 0.68 0.924378
Target:  5'- uGCCGUgAUcAAGcGGCgCGGCGCGGAc -3'
miRNA:   3'- gCGGCAgUGaUUC-CUG-GCUGUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 130629 0.68 0.929507
Target:  5'- aCGCCuuagcGUCACguuu-GCCGACACGGAc -3'
miRNA:   3'- -GCGG-----CAGUGauuccUGGCUGUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 13331 0.68 0.934414
Target:  5'- gCGUCGUCAUcuucgacuaUAAGGAUCGugACcGAGu -3'
miRNA:   3'- -GCGGCAGUG---------AUUCCUGGCugUGcCUC- -5'
30209 3' -55.4 NC_006273.1 + 90359 0.68 0.934414
Target:  5'- cCGCCGgCGCUGGGaugccgcGCCGACGacUGGAGa -3'
miRNA:   3'- -GCGGCaGUGAUUCc------UGGCUGU--GCCUC- -5'
30209 3' -55.4 NC_006273.1 + 79808 0.68 0.939098
Target:  5'- aCGCCGcCACUAcugccGGAgCCGACGCuGAa -3'
miRNA:   3'- -GCGGCaGUGAUu----CCU-GGCUGUGcCUc -5'
30209 3' -55.4 NC_006273.1 + 208880 0.68 0.939098
Target:  5'- gGCCGUUGCUGGGGuguCUGugGuCGGuGa -3'
miRNA:   3'- gCGGCAGUGAUUCCu--GGCugU-GCCuC- -5'
30209 3' -55.4 NC_006273.1 + 142804 0.69 0.888972
Target:  5'- cCGCCGUCGCU--GG-UgGGCACGGGc -3'
miRNA:   3'- -GCGGCAGUGAuuCCuGgCUGUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 73859 0.69 0.888972
Target:  5'- cCGCCGuUCGCgUGAGcgcGGCCGACAUGcGGGc -3'
miRNA:   3'- -GCGGC-AGUG-AUUC---CUGGCUGUGC-CUC- -5'
30209 3' -55.4 NC_006273.1 + 77153 0.7 0.875457
Target:  5'- cCGCCGUCGCc---GGCCGACGCGc-- -3'
miRNA:   3'- -GCGGCAGUGauucCUGGCUGUGCcuc -5'
30209 3' -55.4 NC_006273.1 + 47871 0.74 0.66509
Target:  5'- uCGCCGUC-CUGu-GACCGACGCGGc- -3'
miRNA:   3'- -GCGGCAGuGAUucCUGGCUGUGCCuc -5'
30209 3' -55.4 NC_006273.1 + 196841 0.73 0.704138
Target:  5'- gCGCgGUgGCUGgguugcgcggcGGGGCCGGCgACGGGGa -3'
miRNA:   3'- -GCGgCAgUGAU-----------UCCUGGCUG-UGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 56138 0.73 0.732857
Target:  5'- gGCCG-CGgaGgcGGcGACCGACGCGGAGg -3'
miRNA:   3'- gCGGCaGUgaU--UC-CUGGCUGUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 194706 0.72 0.778987
Target:  5'- aCGCCGcaaacgCGCUGAGGacGCCGACGCGc-- -3'
miRNA:   3'- -GCGGCa-----GUGAUUCC--UGGCUGUGCcuc -5'
30209 3' -55.4 NC_006273.1 + 120885 0.71 0.817087
Target:  5'- aCGCCGUCGCcGAGGAUgcugauuugcguuugCGGCccGCGGAa -3'
miRNA:   3'- -GCGGCAGUGaUUCCUG---------------GCUG--UGCCUc -5'
30209 3' -55.4 NC_006273.1 + 112454 0.7 0.861133
Target:  5'- uCGUCGUCcCcAGGGACCGGCGUGGcAGg -3'
miRNA:   3'- -GCGGCAGuGaUUCCUGGCUGUGCC-UC- -5'
30209 3' -55.4 NC_006273.1 + 13284 0.7 0.875457
Target:  5'- aGCCG-UACUGAGcGugCGAgGCGGGu -3'
miRNA:   3'- gCGGCaGUGAUUC-CugGCUgUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 204586 0.7 0.875457
Target:  5'- aCGaCCGUCGCU--GGACCacGACAacCGGAGc -3'
miRNA:   3'- -GC-GGCAGUGAuuCCUGG--CUGU--GCCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.