miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30209 3' -55.4 NC_006273.1 + 180327 0.82 0.285258
Target:  5'- uCGCCGUCACUGcc-ACCGACAUGGAGc -3'
miRNA:   3'- -GCGGCAGUGAUuccUGGCUGUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 233300 0.68 0.939098
Target:  5'- aGCCGUagCAUguGGGugCGAUGCGGuGg -3'
miRNA:   3'- gCGGCA--GUGauUCCugGCUGUGCCuC- -5'
30209 3' -55.4 NC_006273.1 + 140183 0.67 0.947807
Target:  5'- gCGCCGaCcccgGCUGGGcGGCCGAUggGGGGa -3'
miRNA:   3'- -GCGGCaG----UGAUUC-CUGGCUGugCCUC- -5'
30209 3' -55.4 NC_006273.1 + 215900 0.66 0.97897
Target:  5'- cCGCCG-CGCca---GCUGGCACGGAGu -3'
miRNA:   3'- -GCGGCaGUGauuccUGGCUGUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 56890 0.72 0.778987
Target:  5'- aGCCGUCAacCUGuuGGA-CGACACGGAc -3'
miRNA:   3'- gCGGCAGU--GAUu-CCUgGCUGUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 122935 0.72 0.79664
Target:  5'- aCGCCgGUCcCUGGGGACgacgaacgcggaCGACACGGuGg -3'
miRNA:   3'- -GCGG-CAGuGAUUCCUG------------GCUGUGCCuC- -5'
30209 3' -55.4 NC_006273.1 + 213016 0.7 0.861868
Target:  5'- uCGCCGaaccgcgucugguacCGCUAcugugggcgauGGGACCGACGuCGGAGu -3'
miRNA:   3'- -GCGGCa--------------GUGAU-----------UCCUGGCUGU-GCCUC- -5'
30209 3' -55.4 NC_006273.1 + 197182 0.7 0.868394
Target:  5'- cCGCCGUCuccggaUGAGcGGCCGcgGCGCGGGc -3'
miRNA:   3'- -GCGGCAGug----AUUC-CUGGC--UGUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 73105 0.69 0.907659
Target:  5'- uCGCCGUUGCUGuuccuccgcagaAGGGCCGuCGCGa-- -3'
miRNA:   3'- -GCGGCAGUGAU------------UCCUGGCuGUGCcuc -5'
30209 3' -55.4 NC_006273.1 + 109534 0.68 0.936314
Target:  5'- gGCCGUCGauccgua-CGACACGGAGg -3'
miRNA:   3'- gCGGCAGUgauuccugGCUGUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 61204 0.69 0.913453
Target:  5'- uGCCG-CAC-AAGG-CCGugGCGGuAGg -3'
miRNA:   3'- gCGGCaGUGaUUCCuGGCugUGCC-UC- -5'
30209 3' -55.4 NC_006273.1 + 31760 0.69 0.895416
Target:  5'- gGCCGUCGCggacgaaaguGGGGCCGucuGCAcgcccCGGAGu -3'
miRNA:   3'- gCGGCAGUGau--------UCCUGGC---UGU-----GCCUC- -5'
30209 3' -55.4 NC_006273.1 + 26124 0.78 0.45453
Target:  5'- cCGCCGggCGCUGcGGucCCGACAUGGAGa -3'
miRNA:   3'- -GCGGCa-GUGAUuCCu-GGCUGUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 103100 0.68 0.924378
Target:  5'- uGCCGUCaacGCUGacggagguuGGGACagaaGGgACGGAGg -3'
miRNA:   3'- gCGGCAG---UGAU---------UCCUGg---CUgUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 1949 0.73 0.704138
Target:  5'- gCGCgGUgGCUGgguugcgcggcGGGGCCGGCgACGGGGa -3'
miRNA:   3'- -GCGgCAgUGAU-----------UCCUGGCUG-UGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 14496 0.7 0.878226
Target:  5'- aCGCUGUCugUccuuggguccccccAAGGGCUGGCaugugauguuacguACGGAGg -3'
miRNA:   3'- -GCGGCAGugA--------------UUCCUGGCUG--------------UGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 117999 0.68 0.929507
Target:  5'- cCGCag-CACUcagAGGGugCGACAUGGAc -3'
miRNA:   3'- -GCGgcaGUGA---UUCCugGCUGUGCCUc -5'
30209 3' -55.4 NC_006273.1 + 1988 0.68 0.939098
Target:  5'- aCGaCGUCGCgccagcGGcGAgCGGCACGGAGa -3'
miRNA:   3'- -GCgGCAGUGau----UC-CUgGCUGUGCCUC- -5'
30209 3' -55.4 NC_006273.1 + 234644 0.72 0.778987
Target:  5'- aCGCCGcaaacgCGCUGAGGacGCCGACGCGc-- -3'
miRNA:   3'- -GCGGCa-----GUGAUUCC--UGGCUGUGCcuc -5'
30209 3' -55.4 NC_006273.1 + 211714 0.71 0.822062
Target:  5'- gGCCu---CUGGGGGCCG-CACGGAGc -3'
miRNA:   3'- gCGGcaguGAUUCCUGGCuGUGCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.