miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30209 5' -60.2 NC_006273.1 + 200380 0.66 0.86252
Target:  5'- uGGCUUUaCCgCCGucGCUCCGCGucgcuucgCCGCc -3'
miRNA:   3'- -UCGAAGaGG-GGC--UGAGGCGCca------GGCG- -5'
30209 5' -60.2 NC_006273.1 + 36489 0.66 0.86252
Target:  5'- uGCUguUUUCCguguugCCGACggcggCGCGGUCCGUc -3'
miRNA:   3'- uCGA--AGAGG------GGCUGag---GCGCCAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 21583 0.66 0.86252
Target:  5'- cGGCUgccUgUUCCUGcuGCUaCGCGGUCCGUc -3'
miRNA:   3'- -UCGA---AgAGGGGC--UGAgGCGCCAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 130206 0.66 0.86252
Target:  5'- cGCcg-UCUCCGGCUaccugggcgaggCCGCGGcgCCGCg -3'
miRNA:   3'- uCGaagAGGGGCUGA------------GGCGCCa-GGCG- -5'
30209 5' -60.2 NC_006273.1 + 80366 0.66 0.855313
Target:  5'- ---cUCUCCCCcGCUCCaaGCGGgagCgGCg -3'
miRNA:   3'- ucgaAGAGGGGcUGAGG--CGCCa--GgCG- -5'
30209 5' -60.2 NC_006273.1 + 150529 0.66 0.855313
Target:  5'- aAGCccUCcaCCCUGACggccgCCGCGG-CCGUc -3'
miRNA:   3'- -UCGa-AGa-GGGGCUGa----GGCGCCaGGCG- -5'
30209 5' -60.2 NC_006273.1 + 38958 0.66 0.855313
Target:  5'- uGCUcugCUCCaCCagcgagaGCUCCGUGGUgCUGCa -3'
miRNA:   3'- uCGAa--GAGG-GGc------UGAGGCGCCA-GGCG- -5'
30209 5' -60.2 NC_006273.1 + 186389 0.66 0.855313
Target:  5'- uGGCUUugCUCUCUGACUCgGaGGaguugCCGCa -3'
miRNA:   3'- -UCGAA--GAGGGGCUGAGgCgCCa----GGCG- -5'
30209 5' -60.2 NC_006273.1 + 119787 0.66 0.840373
Target:  5'- cGCUg--UCCCGGCacCCGCaccGUCCGCa -3'
miRNA:   3'- uCGAagaGGGGCUGa-GGCGc--CAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 118196 0.66 0.83265
Target:  5'- cGGCUg-UCgCCCGaacGCUCgGCGGacgCCGCu -3'
miRNA:   3'- -UCGAagAG-GGGC---UGAGgCGCCa--GGCG- -5'
30209 5' -60.2 NC_006273.1 + 96994 0.66 0.83265
Target:  5'- aGGCcgUCUCCCaguguGACcugcgCCGCGGUCUu- -3'
miRNA:   3'- -UCGa-AGAGGGg----CUGa----GGCGCCAGGcg -5'
30209 5' -60.2 NC_006273.1 + 94973 0.66 0.83265
Target:  5'- cGGCggCUCCCU--CUCgGCGGcUCCGg -3'
miRNA:   3'- -UCGaaGAGGGGcuGAGgCGCC-AGGCg -5'
30209 5' -60.2 NC_006273.1 + 95416 0.66 0.827939
Target:  5'- gAGUUUUUCCCCGGCacgaacgcacguccCCGUGGgcuccaCGCg -3'
miRNA:   3'- -UCGAAGAGGGGCUGa-------------GGCGCCag----GCG- -5'
30209 5' -60.2 NC_006273.1 + 38259 0.66 0.824767
Target:  5'- cGGCacggUCCCCGACgCCGCcGGacCCGCc -3'
miRNA:   3'- -UCGaag-AGGGGCUGaGGCG-CCa-GGCG- -5'
30209 5' -60.2 NC_006273.1 + 108382 0.66 0.824767
Target:  5'- cGUUUCUCCugaugCCGGCcgccaCCGCGGUCUcCa -3'
miRNA:   3'- uCGAAGAGG-----GGCUGa----GGCGCCAGGcG- -5'
30209 5' -60.2 NC_006273.1 + 233152 0.66 0.824767
Target:  5'- cGGCacggUCCCCGACgCCGCcGGacCCGCc -3'
miRNA:   3'- -UCGaag-AGGGGCUGaGGCG-CCa-GGCG- -5'
30209 5' -60.2 NC_006273.1 + 81392 0.67 0.80022
Target:  5'- uAGCggCUCUCCaGCgCCuCGGUCUGCg -3'
miRNA:   3'- -UCGaaGAGGGGcUGaGGcGCCAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 130261 0.67 0.80022
Target:  5'- aAGCUgCUCUuuGgACUCaaCGUGcGUCCGCa -3'
miRNA:   3'- -UCGAaGAGGggC-UGAG--GCGC-CAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 178556 0.67 0.791762
Target:  5'- cAGCcUCUCUucgCUGGCUaaugCCgGCGGUCUGCa -3'
miRNA:   3'- -UCGaAGAGG---GGCUGA----GG-CGCCAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 227678 0.67 0.791762
Target:  5'- -uCUcCUCCCCG-CUgCCGCGGccacugCCGCc -3'
miRNA:   3'- ucGAaGAGGGGCuGA-GGCGCCa-----GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.