Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30209 | 5' | -60.2 | NC_006273.1 | + | 233152 | 0.66 | 0.824767 |
Target: 5'- cGGCacggUCCCCGACgCCGCcGGacCCGCc -3' miRNA: 3'- -UCGaag-AGGGGCUGaGGCG-CCa-GGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 200380 | 0.66 | 0.86252 |
Target: 5'- uGGCUUUaCCgCCGucGCUCCGCGucgcuucgCCGCc -3' miRNA: 3'- -UCGAAGaGG-GGC--UGAGGCGCca------GGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 96994 | 0.66 | 0.83265 |
Target: 5'- aGGCcgUCUCCCaguguGACcugcgCCGCGGUCUu- -3' miRNA: 3'- -UCGa-AGAGGGg----CUGa----GGCGCCAGGcg -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 118196 | 0.66 | 0.83265 |
Target: 5'- cGGCUg-UCgCCCGaacGCUCgGCGGacgCCGCu -3' miRNA: 3'- -UCGAagAG-GGGC---UGAGgCGCCa--GGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 108382 | 0.66 | 0.824767 |
Target: 5'- cGUUUCUCCugaugCCGGCcgccaCCGCGGUCUcCa -3' miRNA: 3'- uCGAAGAGG-----GGCUGa----GGCGCCAGGcG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 36489 | 0.66 | 0.86252 |
Target: 5'- uGCUguUUUCCguguugCCGACggcggCGCGGUCCGUc -3' miRNA: 3'- uCGA--AGAGG------GGCUGag---GCGCCAGGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 150529 | 0.66 | 0.855313 |
Target: 5'- aAGCccUCcaCCCUGACggccgCCGCGG-CCGUc -3' miRNA: 3'- -UCGa-AGa-GGGGCUGa----GGCGCCaGGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 21583 | 0.66 | 0.86252 |
Target: 5'- cGGCUgccUgUUCCUGcuGCUaCGCGGUCCGUc -3' miRNA: 3'- -UCGA---AgAGGGGC--UGAgGCGCCAGGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 38259 | 0.66 | 0.824767 |
Target: 5'- cGGCacggUCCCCGACgCCGCcGGacCCGCc -3' miRNA: 3'- -UCGaag-AGGGGCUGaGGCG-CCa-GGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 80366 | 0.66 | 0.855313 |
Target: 5'- ---cUCUCCCCcGCUCCaaGCGGgagCgGCg -3' miRNA: 3'- ucgaAGAGGGGcUGAGG--CGCCa--GgCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 130206 | 0.66 | 0.86252 |
Target: 5'- cGCcg-UCUCCGGCUaccugggcgaggCCGCGGcgCCGCg -3' miRNA: 3'- uCGaagAGGGGCUGA------------GGCGCCa-GGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 95416 | 0.66 | 0.827939 |
Target: 5'- gAGUUUUUCCCCGGCacgaacgcacguccCCGUGGgcuccaCGCg -3' miRNA: 3'- -UCGAAGAGGGGCUGa-------------GGCGCCag----GCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 94973 | 0.66 | 0.83265 |
Target: 5'- cGGCggCUCCCU--CUCgGCGGcUCCGg -3' miRNA: 3'- -UCGaaGAGGGGcuGAGgCGCC-AGGCg -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 186389 | 0.66 | 0.855313 |
Target: 5'- uGGCUUugCUCUCUGACUCgGaGGaguugCCGCa -3' miRNA: 3'- -UCGAA--GAGGGGCUGAGgCgCCa----GGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 119787 | 0.66 | 0.840373 |
Target: 5'- cGCUg--UCCCGGCacCCGCaccGUCCGCa -3' miRNA: 3'- uCGAagaGGGGCUGa-GGCGc--CAGGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 38958 | 0.66 | 0.855313 |
Target: 5'- uGCUcugCUCCaCCagcgagaGCUCCGUGGUgCUGCa -3' miRNA: 3'- uCGAa--GAGG-GGc------UGAGGCGCCA-GGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 179249 | 0.67 | 0.774472 |
Target: 5'- cGCgUCggUCgCCGcCUCCGCGGcCCGUu -3' miRNA: 3'- uCGaAG--AGgGGCuGAGGCGCCaGGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 227678 | 0.67 | 0.791762 |
Target: 5'- -uCUcCUCCCCG-CUgCCGCGGccacugCCGCc -3' miRNA: 3'- ucGAaGAGGGGCuGA-GGCGCCa-----GGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 38046 | 0.67 | 0.774472 |
Target: 5'- cGGCcgCUCCCaCuGCU-CGCGGUCCaGCu -3' miRNA: 3'- -UCGaaGAGGG-GcUGAgGCGCCAGG-CG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 105890 | 0.67 | 0.774472 |
Target: 5'- cGCUgcUUUCCCCGAgCUCCGaCGccUCGCg -3' miRNA: 3'- uCGA--AGAGGGGCU-GAGGC-GCcaGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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