miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30209 5' -60.2 NC_006273.1 + 198511 1.11 0.001481
Target:  5'- gAGCUUCUCCCCGACUCCGCGGUCCGCg -3'
miRNA:   3'- -UCGAAGAGGGGCUGAGGCGCCAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 198850 0.8 0.176908
Target:  5'- aGGUcacCUCCUCcGCUCCGCGGUCCGCc -3'
miRNA:   3'- -UCGaa-GAGGGGcUGAGGCGCCAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 43325 0.75 0.346751
Target:  5'- aAGCgucgUCgCCCCgGACUgcgcCCGCGGUCUGCu -3'
miRNA:   3'- -UCGa---AGaGGGG-CUGA----GGCGCCAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 197159 0.74 0.432951
Target:  5'- cGUUUC-CUCCGGCgCCGCGGuuUCCGCc -3'
miRNA:   3'- uCGAAGaGGGGCUGaGGCGCC--AGGCG- -5'
30209 5' -60.2 NC_006273.1 + 144407 0.73 0.458541
Target:  5'- cGGCUgUCUgCCCGGCgCCGCGG-CgGCg -3'
miRNA:   3'- -UCGA-AGAgGGGCUGaGGCGCCaGgCG- -5'
30209 5' -60.2 NC_006273.1 + 233242 0.71 0.558412
Target:  5'- cGCgUCcgCCCCGACcaCCGCGugcgcGUCCGCg -3'
miRNA:   3'- uCGaAGa-GGGGCUGa-GGCGC-----CAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 38349 0.71 0.558412
Target:  5'- cGCgUCcgCCCCGACcaCCGCGugcgcGUCCGCg -3'
miRNA:   3'- uCGaAGa-GGGGCUGa-GGCGC-----CAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 216568 0.7 0.614561
Target:  5'- cAGCUcCUCCaaCCGACacucgccgcgcaaUCCGCGGUCgaaGCg -3'
miRNA:   3'- -UCGAaGAGG--GGCUG-------------AGGCGCCAGg--CG- -5'
30209 5' -60.2 NC_006273.1 + 104736 0.7 0.61552
Target:  5'- aGGUUUCUCCacaCCGugUCCGU-GUCgGCa -3'
miRNA:   3'- -UCGAAGAGG---GGCugAGGCGcCAGgCG- -5'
30209 5' -60.2 NC_006273.1 + 221371 0.7 0.634707
Target:  5'- cGGCg-CUCCCCG-CUCCGCcaccCCGCg -3'
miRNA:   3'- -UCGaaGAGGGGCuGAGGCGcca-GGCG- -5'
30209 5' -60.2 NC_006273.1 + 85795 0.7 0.634707
Target:  5'- cGGCaUCUagaCCgCCGccACUCgCGUGGUCCGCu -3'
miRNA:   3'- -UCGaAGA---GG-GGC--UGAG-GCGCCAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 153780 0.7 0.653887
Target:  5'- cGCUUCggCCuCCGcCgcggCCGCGG-CCGCc -3'
miRNA:   3'- uCGAAGa-GG-GGCuGa---GGCGCCaGGCG- -5'
30209 5' -60.2 NC_006273.1 + 124453 0.69 0.673005
Target:  5'- cGCggCUCgCCGACgcugcgCuCGCGGUCCaGCc -3'
miRNA:   3'- uCGaaGAGgGGCUGa-----G-GCGCCAGG-CG- -5'
30209 5' -60.2 NC_006273.1 + 94243 0.69 0.673005
Target:  5'- cGGCagggUUCCGGCcgugCUGCGGUCCGCa -3'
miRNA:   3'- -UCGaagaGGGGCUGa---GGCGCCAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 130210 0.69 0.673005
Target:  5'- cGGCgaccgUUUCCCCGuCcUCGCGGacgCCGCu -3'
miRNA:   3'- -UCGa----AGAGGGGCuGaGGCGCCa--GGCG- -5'
30209 5' -60.2 NC_006273.1 + 120275 0.69 0.682524
Target:  5'- cGGCUUCggCCUCG-CUgaUCGCGG-CCGCu -3'
miRNA:   3'- -UCGAAGa-GGGGCuGA--GGCGCCaGGCG- -5'
30209 5' -60.2 NC_006273.1 + 73176 0.69 0.682524
Target:  5'- cGCUUC-CUCCGGCUgcagcgcaCCGCGG-CCGa -3'
miRNA:   3'- uCGAAGaGGGGCUGA--------GGCGCCaGGCg -5'
30209 5' -60.2 NC_006273.1 + 94598 0.69 0.682524
Target:  5'- cGGCgacCUCCgCCGGCUUCcCGGUCCa- -3'
miRNA:   3'- -UCGaa-GAGG-GGCUGAGGcGCCAGGcg -5'
30209 5' -60.2 NC_006273.1 + 30672 0.69 0.692007
Target:  5'- cGGCUUC-CUgCGGCcggCCGCGGUgCCGg -3'
miRNA:   3'- -UCGAAGaGGgGCUGa--GGCGCCA-GGCg -5'
30209 5' -60.2 NC_006273.1 + 139792 0.69 0.700503
Target:  5'- ---cUCUCCCUcaacugccgucagGuCUCCGgGGUCCGCc -3'
miRNA:   3'- ucgaAGAGGGG-------------CuGAGGCgCCAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.